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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcctatctttagaacatttgaagttaattcaggattctaacatgcttaaatcctggtaatgttgtggcctttgatccatggtaatgcagagattgaggattgattatttgcagggattatcgattgaaacatgctatgtatctatgattttgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTATTCATGGTTTTCCTTCTCAA

Basic information

species Vitis vinifera
transcript Vv07s0151g00860.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055280|gb|FQ441878.1|FQ441878
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|27580560|gb|CB003255.1|CB003255
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351054424|gb|FQ450507.1|FQ450507
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|352790943|gb|FQ479936.1|FQ479936
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351054345|gb|FQ450428.1|FQ450428
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351053960|gb|FQ441726.1|FQ441726
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351038630|gb|FQ464496.1|FQ464496
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351041932|gb|FQ456142.1|FQ456142
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351044390|gb|FQ452942.1|FQ452942
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351056109|gb|FQ453571.1|FQ453571
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351057496|gb|FQ440090.1|FQ440090
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351044595|gb|FQ443126.1|FQ443126
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|27579662|gb|CB002357.1|CB002357
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|352790264|gb|FQ481463.1|FQ481463
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351054568|gb|FQ462675.1|FQ462675
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|352798862|gb|FQ478497.1|FQ478497
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|32250149|gb|CD715968.1|CD715968
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351032736|gb|FQ462450.1|FQ462450
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351039837|gb|FQ464875.1|FQ464875
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351037996|gb|FQ460738.1|FQ460738
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351044516|gb|FQ443047.1|FQ443047
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351054394|gb|FQ450477.1|FQ450477
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|352789760|gb|FQ478575.1|FQ478575
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351054311|gb|FQ450394.1|FQ450394
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351037499|gb|FQ460698.1|FQ460698
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351039712|gb|FQ464750.1|FQ464750
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351038914|gb|FQ457589.1|FQ457589
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351039029|gb|FQ457704.1|FQ457704
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCGGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351057344|gb|FQ454026.1|FQ454026
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351055936|gb|FQ453397.1|FQ453397
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
EST: gi|351053868|gb|FQ441634.1|FQ441634
EST:     TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAG                         ATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT
genomic: TTTGGACTTAAAATGGGTGCTGGTTCCCAGGCCTCTGATGATCTTTTCAGgtatttccta ... tgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcagggattatcgattgaaacatgctatgtatctatgattttgtgcaatagATGGTTTTGCATTGAAAGCGGAAGTCCAGACAACCATTCAGTTATTCTTATTCATGGTTTTCCTTCTCAA
                                     tatgatttt  TA-rich tract