Sequence
atgc intronic sequence ATGC exonic sequencegtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G028151_T02 (Zea mays), 3'ss of exon 2
-----------------gtaataatttgaaccccattggagtgcagtgatctgttggttctttgc-aattgaaa----tgcagtcgtttgttttttggc-------------agTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
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gtaatgaaccgaagacaacgatagtctgagtctgagaatggtgttgtcttgttcacaatgtgtgctgattgatgatcttggtgttgtccattttaacgcgccgcgcggagtcagGTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAG
upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G22970.1 (Glycine max), 3'ss of exon 7
-------------------------------gtaataatttgaacccca--ttggagtg-cagtgatc----tgttggt-tctttgcaattgaaatgcagtcgtttgttttttgg---cagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
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gtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacagTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAG
upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G17010.1 (Glycine max), 3'ss of exon 5
-----------------------------------------gtaataatttgaaccccattgg--------agtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
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gtaataactaataacttatttctcttttctcttccatgtttccactgactcaagtttcagtaactgtgactaaaataataatcttatggcattttttttcttcttttccattctct-tctaataaaagTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAG
upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G40380.1 (Glycine max), 3'ss of exon 4
---------------gtaataatttgaacccc--attggagtgcagtgatctgttggttctttgcaattgaa---atgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
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gtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatg-accttttaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAG
upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G04910.1 (Glycine max), 3'ss of exon 5
-----------------------gtaataatttgaaccccattggag-tgcagtgatctgttggttctttgcaattgaaatgcagtcgtttg---ttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
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gtaatgattactttttttttttcttctcattttttttctgattgggtctgtattcagcttccaggatttaataacagtaactaatgcatgtatgatctattaacagTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTAGCTCATTTACGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
tttgtttttt CT-rich tract
tttgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcagTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC