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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaatctttcacttttgtagattctgtcaaatgctactcacaaatgtacagattcacagattcattactagtttttcaatggtgcagGTGATCTTCACTGGAAAATGGTCTTTGTTTACATTCACAGAACAGGCCAG

Basic information

species Vitis vinifera
transcript Vv07s0151g00290.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G31340.1 (Glycine max), 3'ss of exon 4
gta--attaatctttca--cttttgtagattctg-tcaaatgctactcacaaatgtacagattcacagattcattactagtttttcaatggtgcagGTGATCTTCACTGGAAAATGGTCTTTGTTTACATTCACAGAACAGGCCAG
|||  || ||||    |  ||  | |     |||     ||  |  ||  |  |  | | ||    | | ||  |  | ||  |  |    |||||||||||||||||||||||| || | |||||| || || ||||| ||||||
gtagtatcaatcacaaatgctgctattagcactgactcgatctttttcttattttcaaaaatgattaaactccattttggtggtaaa----tgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAG

upper sequence: Vv07s0151g00290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G31340.2 (Glycine max), 3'ss of exon 4
gta--attaatcttt--cacttttgtagattctgtca-aatgctactcacaaatgtacagattcacagattcattactagtttttcaatggtgcagGTGATCTTCACTGGAAAATGGTCTTTGTTTACATTCACAGAACAGGCCAG--------------------------------------------------
|||  || ||||       ||  | |     ||| |   ||  |  ||  |  |  | | ||    | | ||  |  | ||  |  |    |||||||||||||||||||||||| || | |||||| || || ||||| ||||||                                                  
gtagtatcaatcacaaatgctgctattagcactgactcgatctttttcttattttcaaaaatgattaaactccattttggtggtaaa----tgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGTAAATTTTTCTTTTAAGAATTCGCAGCAGATGGAGTTGCCTTAATGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctactcacaaatgtacagattcacagattcattactagtttttcaatggtgcagGTGATCTTCACTGGAAAATGGTCTTTGTTTACATTCACAGAACAGGCCAG
  tactcac  putative branch site (score: 1)
                                       tttttca  putative PPT
                                       tttttcaat  TA-rich tract