1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catgcaggagtcaatctttcttgtgagaactaagttggcacttgaaaaagtaaaggatgcaacattctgattgcttacataaactcataatacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAG
species | Vitis vinifera |
transcript | Vv07s0141g00390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAG AACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAEST: gi|110723818|gb|EE099103.1|EE099103
genomic: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgattttt ... tacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATA
EST: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAG AACTTAGGATTGGAGACAGTANGAGTAAAAATGACCAAGACTGGAGCAATAEST: gi|161712070|gb|FC061442.1|FC061442
genomic: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgattttt ... tacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATA
EST: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAG AACTTAGGATTGGAGACAGTAGGAGTAAAAAATGACCEST: gi|30300914|gb|CB977708.1|CB977708
genomic: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgattttt ... tacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAA-TGACC
EST: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAG AACTTAGGACTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATA
genomic: AAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgattttt ... tacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATA
aaaagtaaaggatgcaacattctgattgcttacataaactcataatacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAG
tgcttac putative branch site (score: 2)
ataaactcataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgcaggagtcaatctttcttgtgagaactaagttggcacttgaaaaagtaaaggatgcaacattctgattgcttacataaactcataatacattgcagAACTTAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
catgcag
- - - - - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataaac