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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtacatctttatcttgaattgttcttattgcattttttatttattgtgttttttttcctctgttacttttctgtatttattttctgtttggttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGGATCTCATATTGGAAACCAAATATTACAATTAATTTAGTTGATGATTTCA

Basic information

species Vitis vinifera
transcript Vv07s0130g00170.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714627|gb|FC063587.1|FC063587
EST:     GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAG                         ATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
genomic: GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAGgtttgtcctt ... gttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
EST: gi|110701765|gb|EE079713.1|EE079713
EST:     GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAG                         ATGGTTGAGGACACTCANGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
genomic: GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAGgtttgtcctt ... gttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
EST: gi|110728716|gb|EE104530.1|EE104530
EST:     GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAG                         ATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGG
genomic: GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAGgtttgtcctt ... gttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGG
EST: gi|352781182|gb|FQ466495.1|FQ466495
EST:     GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAG                         ATGGTTGAGGACACTCAGGCCGATTCAAAAGACGAAGGTCCTGTGGATTGG
genomic: GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAGgtttgtcctt ... gttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
EST: gi|352776527|gb|FQ474829.1|FQ474829
EST:     GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAG                         ATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG
genomic: GCCTGCTCGGGAATTCCAAAGAATCTGATGAGGTTGTAAAAGCATCTGAGgtttgtcctt ... gttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttttttttcctctgttacttttctgtatttattttctgtttggttgcttcagATGGTTGAGGACACTCAGGCTGATTCAAAAGACGAAGGTCCTGTGGATTGGATCTCATATTGGAAACCAAATATTACAATTAATTTAGTTGATGATTTCA
                                              ttgcttc  CT-rich tract
                 ttacttttctgtattt  TA-rich tract