Sequence
atgc intronic sequence ATGC exonic sequencegtattgtttcataatcctattccttttgtgaattgtttatttgtagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G36650.2 (Glycine max), 3'ss of exon 4
gtattgtttcataatcctattccttttgtgaattgtttatttgtagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
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-------gtgctgatttcacacatta-atcaatcctttattta-aggccttggtgtttcttaactgcatagagtt---attcatagttct-cttatt----ttgtggtagGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTACTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAG
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G39300.1 (Glycine max), 3'ss of exon 4
gtattgtttcataatcctattccttttgtgaattgtttatttgtagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
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gtgctgatttgacaccttaatc--------aatcctttattta-aggctttggtgtttcttaact--gcaaagtgt-tattcatagttct-cttact----ttgtggtagGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAG
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G02700.3 (Glycine max), 3'ss of exon 3
gtattgtttcataatcctattccttttgtgaattgtttatttgtagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
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---gtgcctaatgttacagatgaagctatcctttattccttt-tgggc-attgtagtttcttaatag-caaagctt-tattcatagctgtattcctttga------gtagGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTTGAGGCAATCAATGGAAAACATACAATGGAG
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G17090.1 (Glycine max), 3'ss of exon 4
gtattgtttcataatcctattccttttgtgaattgtttatttg--tagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
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------gtgcctaatgttacagatgaagcca-ttctttattccctttgagcattgtagcttcttaatag-caaagctt-tattcgtagctgtattcctt-tgt-----gtagGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCTTTACTGCTCTTGAAGCAATCAATGGAAAGCATACAATGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
acttgac putative branch site (score: 4)
ttctattt putative PPT
tctatttattctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattgtttcataatcctattccttttgtgaattgtttatttgtagactattgtgacctcaaacttgacatggtttgtatttgtacctctatttattctatttatggcagGTTGTGCTTTTTTGAAGTATGAGACCAAAGAACAGGCCCTTGCAGCCCTGGAGGCGATCAATGGGAAGCATAAAATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG