1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtttgtaggctttatgcctttttaaataaagtttgttcaaatcaacacagctttaattgtcgcctttctcatgatctttcttttcgaatttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCATATCATGGCTTAGCACTGAATGTCACCACAGACCTTACTCCCTTTCAGCT
species | Vitis vinifera |
transcript | Vv07s0104g00810.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTG GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCATEST: gi|27579765|gb|CB002460.1|CB002460
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
EST: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTG GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCATEST: gi|110373706|gb|EC937992.1|EC937992
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
EST: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGTGTTTGGGTTG GGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
genomic: ATTTTCTATTAAAGCTTCTCGACTTGAGGGTTTTACTGGCGTTTGGGTTGgtatgcttcc ... tttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCAT
aacacagctttaattgtcgcctttctcatgatctttcttttcgaatttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCATATCATGGCTTAGCACTGAATGTCACCACAGACCTTACTCCCTTTCAGCT
ctttaat putative branch site (score: 4)
tttacttc putative PPT
tttaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttgtaggctttatgcctttttaaataaagtttgttcaaatcaacacagctttaattgtcgcctttctcatgatctttcttttcgaatttacttcagGGGATCAGAAACTAGCAGCCATTGGGATACGAGTGTCTCAATGGATAGCATATCATGGCTTAGCACTGAATGTCACCACAGACCTTACTCCCTTTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - tatgcct
- - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - caacaca