1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atcaaatagataactaggcagttttaatgggaattcatgcatgaattctcagttgtgttgaaggcagattctaattagtggctttgcctgcttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAAGGGGAAAAATCCAGTGACTCTAGATCACTTGAGTGTTAGAGGCAACAA
species | Vitis vinifera |
transcript | Vv07s0104g00160.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|110715316|gb|EE093229.1|EE093229
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|32246247|gb|CD712066.1|CD712066
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|71873275|gb|DT022330.1|DT022330
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|27583587|gb|CB006282.1|CB006282
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|110726188|gb|EE101761.1|EE101761
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|77578278|gb|DV217913.1|DV217913
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|110717228|gb|EE092911.1|EE092911
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|30131461|gb|CB916800.1|CB916800
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|110690320|gb|EE067314.1|EE067314
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: ATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|110419993|gb|EC986253.1|EC986253
genomic: ATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAEST: gi|71872888|gb|DT021943.1|DT021943
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
EST: TGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAG GTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
genomic: CGTGTCTATCGAGCTCAAGAATGGAACCGTGGTTCATGGCACCATAACAGgtttttaaac ... cttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGA
ttctcagttgtgttgaaggcagattctaattagtggctttgcctgcttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAAGGGGAAAAATCCAGTGACTCTAGATCACTTGAGTGTTAGAGGCAACAA
ttctaat putative branch site (score: 2)
cctgctt putative PPT
attctaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaatagataactaggcagttttaatgggaattcatgcatgaattctcagttgtgttgaaggcagattctaattagtggctttgcctgcttgttatagGTGTTGATATTAGTATGAACACACATTTGAAGACAGTGAAACTTACGTTGAAGGGGAAAAATCCAGTGACTCTAGATCACTTGAGTGTTAGAGGCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -aaataga
- - - - - - -ctaggca
- - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaggca