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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcatagcccatcttatccagtcattctgactttccatcatagtgttttgagctgttactaatctcggaaaaatattacagACTGTGGTTTGCATTCCTTTAATGGATGGCGTGGTTGAATTTGGCACCACTGAGAAG

Basic information

species Vitis vinifera
transcript Vv07s0104g00090.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G16670.1 (Glycine max), 3'ss of exon 3
------------------gtaaatttcatagcccatcttatccagtcattctgactttccatcatagtgttttgagctgttactaatctcggaaaaatattacagACTGTGGTTTGCATTCCTTTAATGGATGGCGTGGTTGAATTTGGCACCACTGAGAAG
                    ||   | ||     ||  ||   |   ||| |   |||  || | | || |  ||  ||| | |  |  |  |  |||  | ||||| ||||| |||||||||||| |||||||||| ||||||||||| || || || |||
ttagctaatataagacagaaaagaattatcaaa-ataataaataaatattttatttttatataa-aatgatg-gatttgtgatttgtgccatacgaat--tgcagACCGTGGTGTGCATTCCTTTATTGGATGGCGTCGTTGAATTTGGGACAACAGATAAG

upper sequence: Vv07s0104g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G03140.1 (Glycine max), 3'ss of exon 3
-------------gtaaatttcatagcccatcttatccagtcattct---gactttccatcata-gtgttttgagctgttactaatctcggaaaaata--ttacagACTGTGGTTTGCATTCCTTTAATGGATGGCGTGGTTGAATTTGGCACCACTGAGAAG
              |||||   | |    |   |||| |   | | |    |  ||  ||  ||  |    |||   |||  | || |  |  | ||    | ||||||||||| |||||||||||| |||| || |||||||| |||||||| |  || |||
aagtttagctgatataaataaaacacaaaaaactatcaaaataatatataaatattttattttatataaaatgatgggtttgtgatttgtgtgatatgagCTGCAGACTGTGGTGTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAATGGATAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgactttccatcatagtgttttgagctgttactaatctcggaaaaatattacagACTGTGGTTTGCATTCCTTTAATGGATGGCGTGGTTGAATTTGGCACCACTGAGAAG
                              tactaat  putative branch site (score: 1)
                                          aaaaatattaca  TA-rich tract