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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattactatcacttgatatcagctatgagtttctctgacttaaaaatttacaaactcactctttaatgtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248254|gb|CD714073.1|CD714073
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30327891|gb|CD011153.1|CD011153
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110720016|gb|EE095627.1|EE095627
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30125799|gb|CB911138.1|CB911138
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30133769|gb|CB919108.1|CB919108
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|71855285|gb|DT004340.1|DT004340
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCGAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110719628|gb|EE094920.1|EE094920
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30135395|gb|CB920733.1|CB920733
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32271216|gb|CD720375.1|CD720375
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|161716956|gb|FC068141.1|FC068141
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|161707320|gb|FC056848.1|FC056848
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|30127312|gb|CB912651.1|CB912651
EST:     GAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: GAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32248260|gb|CD714079.1|CD714079
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|32268821|gb|CD717980.1|CD717980
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
EST: gi|110718742|gb|EE095919.1|EE095919
EST:     TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAG                         GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA
genomic: TAGTAGTAGAAAAAGGCGTGATTCCATCAGAGAGACTTGGATGCCTAAAGgtattactat ... gtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgagtttctctgacttaaaaatttacaaactcactctttaatgtttgattagGGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG
               acttaaaaatttacaa  TA-rich tract