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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgatgagattttttattccatttattcttaacatcattctatacctcttgattggcttgatgtgtttttgtatccagCTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGG

Basic information

species Vitis vinifera
transcript Vv07s0031g02960.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G19960.1 (Glycine max), 3'ss of exon 4
gtatgctgatgagattttttattccatttattcttaacatcattctatac------ctcttgattg--gcttgatgtgtttttgtatccagCTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGG
|||| |||   |  |||  |     ||  ||| | || |  || ||  |        ||||||||   ||||  ||  |||||| ||||||| || || | ||| || |||||  |||| || ||  || |  |  |  | ||||||||||| ||||| |||||||| || ||||| |||||||||| |||
gtattctgtcaaagtttcattaattatccattatgaaaaaaatgcttaatggtattttcttgattattgctttctgc-tttttgcatccagCATTCCTCTCATACACTGCCTCAACAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718353|gb|FC065012.1|FC065012
EST:     GAGTTCCCTGGCCTCAGTAGAAGAAATTTGGGAATTAGCTATCCAACCAG                         CTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCT
genomic: GAGTTCCCTGGCCTCAGTAGAAGAAATTTGGGAATTAGCTATCCAACCAGgtatgctgat ... ttgtatccagCTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcttaacatcattctatacctcttgattggcttgatgtgtttttgtatccagCTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGG
                                        tgttttt  CT-rich tract
                                          tttttgtat  TA-rich tract