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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACACTGGTGTGCAGTTTTTCCAAGACAGGGTCAAAGTATTGCATCCCTCTGA

Basic information

species Vitis vinifera
transcript Vv07s0031g02690.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 4
gtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACACTGGTGTGCAGTTTTTCCAAGACAGGGTCAAAGTATTGCATCCCTCTGA
                                           || |    || || ||  ||    || ||| ||     | |       |||   ||||| |||   | |        ||    ||| |    ||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||
-------------------------------------------gtatgctttatta-aacctaaacaacaattgtgg----ttttcttctttattccaaaataattcaacag--------aattacattatggcatgcagAAGTGGACGAATGGGAAATAGCTCCTCGTTTCTCAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGA

upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G00520.1 (Glycine max), 3'ss of exon 3
gtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACACTGGTGTGCAGTTTTTCCAAGACAGGGTCAAAGTATTGCATCCCTCTGA
                                           || |    || || ||  ||    || |||        |         |||   ||| |||||   | |  | |||    ||||  |      |||||||| ||   ||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||| ||||||| || ||||| ||| ||||||||||
-------------------------------------------gtatgcattatta-aacctaaacaacaattgcagtttcttctt-----tattccaaagtgattcaacagaac-tacattaatgacat------gcagAAGTGGACAAATGGGAAATAGCTCCTCCTTTCTCAGATTTGCTGGCAAATACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860215|gb|DT009270.1|DT009270
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71865150|gb|DT014205.1|DT014205
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71862339|gb|DT011394.1|DT011394
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71862681|gb|DT011736.1|DT011736
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
EST: gi|71855322|gb|DT004377.1|DT004377
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGAT
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGAT
EST: gi|71863748|gb|DT012803.1|DT012803
EST:     GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAG                         AAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA
genomic: GTCTGAACGTTTTGTTTTTAAGCCAATGTTGTATGAACTTCTAACGGGAGgtatgttgtt ... tcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACACTGGTGTGCAGTTTTTCCAAGACAGGGTCAAAGTATTGCATCCCTCTGA
                               tactaac  putative branch site (score: 0)
                                          ttttcctttgc  putative PPT
     atataataaaatgatt  TA-rich tract