Sequence
atgc intronic sequence ATGC exonic sequence...atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G21480.1 (Glycine max), 3'ss of exon 5
atttcactggcccccttcacaact-tagcaattcacatataaatcataagtggtt--attatttctattgagttcagtgatttattta-tgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
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-cttaattgagtagcttgtcttttgttgaatcctacattttaatctgcaatactttaattagtt-tattattctcgtactaaggtttactggctta--ttgcagGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAGCAACTTGTTGAAGGACGTCAAACACGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTCTTTTTCTG
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G36200.1 (Glycine max), 3'ss of exon 2
atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatt---tgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
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--gtgagtagaagcgttaattttacaggtcttaactcttaatcaattctttgttcttattcttaatct-tacaataaggt-tcaattccttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAGCAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGCGTTCTCTTTTTCTG
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G32970.1 (Glycine max), 3'ss of exon 3
------atttcactggcccccttca---caacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
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agcttgagcagcttggttttgttgaatcctacattttaatctgca-atactttataattagtt--tattattctcgtgctaag--gtttact---ggcttaatt-gcagGTGGTGGCAGTTCAGGTTGGCAGGCACCAGAACAACTTGTTCGAGGACGTCAAACCCGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTTTTTTTCTG
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G09240.1 (Glycine max), 3'ss of exon 5
--atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatt---tgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
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gtgagtagaagcattgatttacaggtct-tagctctta-atcaattctttgttcttattcttaatcttacaataag-gttcaatcaatgtcttaattgcatgtagGCTGTGGAAGTTCAGGGTGGCAAGCACCGGAACAACTTGTTCAAGGACGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTG
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G17520.1 (Arabidopsis thaliana), 3'ss of exon 5
atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
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agtgtctgaacgcaatgtatgatcgtttgttgaatatgtgttatgtttatgaaatgagtttcaacccacatttttaaagtatctgctttaaaaactacagGTTCTGGCAGTTCGGGCTGGCAAGCACCAGAGCAGCTTCTACAAGGTCGTCAAACTCGTGCAGTCGATATGTTTAGTTTAGGTTGTGTCATCTTTTACACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547682|gb|CF515914.1|CF515914EST: TAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGATCATCATGCTACTG GTTATGGCAGTTCAGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCC
genomic: TAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtc ... caatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagtggttattatttctattgagttcagtgatttatttatgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
ttattatttctattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttcactggcccccttcacaacttagcaattcacatataaatcataagtggttattatttctattgagttcagtgatttatttatgactcaatttgcagGTTATGGCAGTTCGGGTTGGCAGGCACCTGAGCAGCTTCTTCATGGACGCCAAACACGAGCAGTAGATTTGTTTAGTTTAGGTTGCATCCTCTTTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - cccttca
- - - - - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - - - - -aaatcat