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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatcagtgctccttcaattctcttgctttccccttttcacatatatatatatatatattttatttatagttcttaatgtttttgttgtaatttcatgtgtagAAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATG

Basic information

species Vitis vinifera
transcript Vv07s0031g02090.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 3
gtaagcatcagtgctccttcaattctcttgctttccccttttcac--atatatatatatatatattttatttatagttcttaatgtttttgttgtaatttcatgtgtagAAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATG
         ||||||     |    | |  |    |    | ||   || |   |   |   |  | |||||     | ||  |||||||| ||  |       |  |||||||||| ||   |||  |||||||||||||||||||||| ||||| || || || || || |||||||||||||| || ||||||||||||
---------agtgcttgcagagaagtttatccacacaagatccagtaatgtgctttcgtggttggtctattttcttatgtttttgtttttgatggtaacatggtttcagAAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATG

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 3
gtaagcatcagtgctccttcaattctcttgctttccccttttcac--atatatatatatatatattttatttatagttcttaatgtttttgttgtaatttcatgtgtagAAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATG
       | ||||||  |  |    | |  |         | |||  || |   |   |   |  | || |  ||  | ||  |||||||| ||  | |     |  |||||||||| ||   |||  |||||||||||||||||||||| ||||| || || || || || |||||||| ||||| || ||||||||||||
-------taagtgcttgtggagaagtttatccacataagatccactaatgtgctttcgtggctggtctactcttatgtttt--tgtttttgatggtaatgtggtttcagAAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATG

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S206_101V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------gta-agcatcagtgctccttcaattctct-tgctttccccttttcacatatatatatatatatattttatttatagttcttaatgtttttgttgtaatttcatgtgtagAAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATG
                                              |||  |  |||||  ||  ||   |   | | |||| || | |    |  |      ||||  ||| |      ||       | || || |  |  || | | | ||||||    |    |||||||| || || || |||||||| || ||||||||||||| ||| ||||| || |||||||| ||  | || ||   |
gtctgtatacaatgaacttgttattctttttaccaagtattgcgtagtatggtttcagtattctgtcgccttcatgtacttttccgtgtagcaagttgggggaatattgattatgagacgagccaacggtattgttttcttttttccttttttagAAAGCCGCTGCAAAGCAGCTCGTTCACCAAGTGTTTCCCAAGCTTGCCGTTTACAGCTCCGTTGATCCCTCATTGGCTCCCGCCCTGCTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatatattttatttatagttcttaatgtttttgttgtaatttcatgtgtagAAAAGTTCCCAGAAGCAGCTAGTGCATCATGTGTTTCCAAAACTTGCCGTTTACAACTCGGTTGACCCTTCATTGGCACCTTCTCTTCTCATG
                       tcttaat  putative branch site (score: 3)
     atatattttatttata  TA-rich tract