1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccatacccctgtcactagtttaagttatagattactatctgattaacatgtaaatgactagttttgactgactcaattctgttactgattatgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTGGGGCATACTGCTCCAGTGCAGGCTGCATCTCTGCTGTTATTAGGACCCT
species | Vitis vinifera |
transcript | Vv07s0031g01860.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTAT TATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCGTTCAACCTATTGEST: gi|34544353|gb|CF512585.1|CF512585
genomic: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTATgtaagtcatc ... atgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTG
EST: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTAT TATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCGTTCAACCTATTGEST: gi|71886650|gb|DT035705.1|DT035705
genomic: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTATgtaagtcatc ... atgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTG
EST: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTAT TATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTGEST: gi|110721721|gb|EE099039.1|EE099039
genomic: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTATgtaagtcatc ... atgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTG
EST: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCANCAGTAT TATGTGCATTTTCTTCAACGGAAGTATTCCTTAAGCTCATTCAACCTATTG
genomic: GTTTCATTGCTGCTTTTGTTGCAGTTTGGAGCACAGCTCTGCAGCAGTATgtaagtcatc ... atgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTG
acatgtaaatgactagttttgactgactcaattctgttactgattatgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTGGGGCATACTGCTCCAGTGCAGGCTGCATCTCTGCTGTTATTAGGACCCT
tactgat putative branch site (score: 2)
taaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatacccctgtcactagtttaagttatagattactatctgattaacatgtaaatgactagttttgactgactcaattctgttactgattatgtctgcagTATGTGCATTTTCTTCAACGGAAGTATTCCTTAGGCTCATTCAACCTATTGGGGCATACTGCTCCAGTGCAGGCTGCATCTCTGCTGTTATTAGGACCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
ccatacc
- - - -cctgtca
- - - - - - - - - - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactga