Sequence
atgc intronic sequence ATGC exonic sequence...ttcttttttatgcttgagcagtgagattgatgcagttacttgtgaaacaatttagaaatggtggcactcactaacagtttcattcatactgttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os04g54640.1 (Oryza sativa), 3'ss of exon 4
-------------------------------------------------------------ttcttttttatgcttgag--cagtgagatt--gatgcagttacttgtgaaacaatttagaaatggtggcactcactaacagtttcattcatactgttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
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gtatttccttgctacctcctctttgtgctactctggattgataaaaataatccttttttttttccttacaagatataagtgcattaggcttcggtcacaggttcctgcaaaataattttc---tagtgatattaataaacatcctatgatatatctctatctcagGATTGGGGCTTTTTCGTTCCTTACTTGATTGGAAGCATCTCATTGATAGTATTGGCTATCGGAAGTATTTCTCCCGG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G14970.1 (Glycine max), 3'ss of exon 4
--ttcttttttatgcttgagcagtgagattgatgcagttacttgtgaaacaatttagaaatggtggcactcactaacagtttcattcatactgt-tgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
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atttttcttctaactacttcccacacactccaccaagcagaccttaaaataattttgactttttt---ttccatctctgattgatgtgtgctgaatcttgtagGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCATTAGTGGTTTTGGCTGTAGGTAGCATATCCCCAGG
upper sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G31720.1 (Glycine max), 3'ss of exon 4
-ttcttttttatgcttgagcagtgagattgatgcagttacttgtgaaacaatttagaaatggtggcactcactaacagtttcattcatactg-ttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
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tttttcttctaactacttcccacacactcaaccaggcagaccttaaaataattttgacattttttttccatct--ctgattgatgtgtgctgactcttgtagGATTGGGGCTTCTTTGTACCGTACTTGATTGGGAGTATCTCATTAGTGGTTTTGGCTGTGGGTAGCATATCCCCAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32270105|gb|CD719264.1|CD719264EST: TAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG GATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTT
genomic: TAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGGgtaacttaat ... gttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaatttagaaatggtggcactcactaacagtttcattcatactgttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
cactaac putative branch site (score: 1)
tttagaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcttttttatgcttgagcagtgagattgatgcagttacttgtgaaacaatttagaaatggtggcactcactaacagtttcattcatactgttgctgtagGATTGGGGCTTTTTTGTGCCATACCTGATTGGGAGCATCTCTTTAATAGTTTTGGCTATTGGCAGCATTTCCCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - tgcttga
- - - - - - - - - - - - - - gatgcag
- - - - - - - - - - - - - - - - - - - - - - aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac