1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagagaaacgatgtatttaaatgtgcaacccaaacatcctattgatattaaaaaaaatataattttctgatatcttaatttgtgttgaatctgttaatagGTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTCCAAACTCCTGGG
species | Vitis vinifera |
transcript | Vv07s0031g01350.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT GTCTTGGAGGAGCCATCCGAAACACAGATGATGGGATTGCAAGATGCTTTCEST: gi|110712897|gb|EE088346.1|EE088346
genomic: TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTTgtatgttctc ... ctgttaatagGTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTC
EST: TGAAAACGAGCCTTCTAGGTGCTGANTA-TCTGCAGATCCGAGACTTT GTCNTGG-GGAGEST: gi|110418266|gb|EC984402.1|EC984402
genomic: TGAAAACGAGCCTTCTAGGTGCTGA-TAATCTGCAGATCCGAGACTTTgtatgttctc ... ctgttaatagGTCTTGGAGGAG
EST: TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTT GTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTC
genomic: TGAAAACGAGCCTTCTAGGTGCTGATAATCTGCAGATCCGAGACTTTgtatgttctc ... ctgttaatagGTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTC
tattaaaaaaaatataattttctgatatcttaatttgtgttgaatctgttaatagGTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTCCAAACTCCTGGG
tcttaat putative branch site (score: 3)
aaaaaaatataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagaaacgatgtatttaaatgtgcaacccaaacatcctattgatattaaaaaaaatataattttctgatatcttaatttgtgttgaatctgttaatagGTCTTGGAGGAGCCATCCGAAACTCAGATGATGGGATTGCAAGATGCTTTCCAAACTCCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- gagaaac
- - - - - - - - - - - - -caaccca
- - - - - - - - - - - - - - - - - catccta
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa