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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatgttaattactctttttgaggtgtaaatacattgtttcttactacatgattggaacattatggattccatttcaaaattctcattttggaaaactttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA

Basic information

species Vitis vinifera
transcript Vv07s0031g01330.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g07570.1 (Oryza sativa), 3'ss of exon 4
----gttcatgttaattactctttttgaggtgtaaatacattgtttcttactacatgattggaacattatggattccatttcaaaattctcattttgg---------aaaactttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA
    | |  | |  || |  ||||||      |  | | |||||  ||| |  ||   ||  | |   | | | |   |   |      || | |||          |  | | ||||| |||||||| ||||| ||| |||| |||||||| || ||  | | ||||||||  ||||| |||||||| ||||||||||| ||||| ||||| || |
gtatgattttttatatgatactttttacataatcgaaagattgtagctttcctcagctttttatctgaaagaacttactgatatggcgatcttgttgatacatgaacatgaatgtagGGCGTGGGAGGTGCAGTTGAACTAGCTCCTGGATATTTAAAGTTAGCTTATGACACTGTCCGGAAGGCTGGTGGTGTTTGTATAGCTGATGAAGTCCAGA

upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G124353_T01 (Zea mays), 3'ss of exon 4
----------------gttcat--gttaattact----ctttttgaggtg-taaatacattgtttcttactacatgattggaacattatggattcc-atttcaaaattctcattttggaaa----actttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA
                |  |||   | || | ||    ||  ||||  |  ||  ||  || | | |    ||   |||  || || |   || |   |  |||  || |   |     |      || ||||| |||||||| || || ||| |||| ||||||||| | ||  | | ||||||||| || ||||||||||| || |||||||||||||| ||||| || |
gtataaactttgaacagaccatttataaaatgctagaactaattgaaataatatgtatcttttgtttataaacccaattcaaa-ataacttatccttgtcgcaatcttgttgatacaccatctctgctgtagGGTGTGGGAGGTGCTGTTGAACTAGCTCCTGGATACCTAAAGTTAGCTTATGACATTGTGCGCAAGGCTGGTGGCGTTTGTATTGCTGATGAAGTCCAGA

upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G36000.1 (Glycine max), 3'ss of exon 4
gttcatgttaattactctttttgaggtgtaaat---acattgtttcttactac-atgattggaacattatggattccatttcaaaatt--ctcattt--tggaaaactttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA----
||  |    |   |   | ||| |  | ||||    | | || |  |||   | |          | | ||| || | | | |   ||  ||||| |  |||     | |||||||  ||||||||||| ||| | || ||||| ||| | |||||||| |||||||| || | ||| ||||| ||||| || |||||||| |||||||||     
gtataatccatccatcatgtttaatttctaaacttcagagtggtatttatagccacacacaccttagtgtggttttcctatgactttttcctcatgtcatggcttcttctagggagCTGGAGGAGCAGTTGAACTGGCACCTGGGTACCTAAAACTGGTCTATGACATTGTACACAAAGCTGGTGGTGTCTGCATTGCTGATGAAGTGCAATGTGG

upper sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G36000.3 (Glycine max), 3'ss of exon 4
----gttcatgttaattactctttttgaggtgtaaat---acattgtttcttactac-atgattggaacattatggattccatttcaaaatt--ctcattt--tggaaaactttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA
    ||  |    |   |   | ||| |  | ||||    | | || |  |||   | |          | | ||| || | | | |   ||  ||||| |  |||     | |||||||  ||||||||||| ||| | || ||||| ||| | |||||||| |||||||| || | ||| ||||| ||||| || |||||||| ||||||||| 
gcatgtataatccatccatcatgtttaatttctaaacttcagagtggtatttatagccacacacaccttagtgtggttttcctatgactttttcctcatgtcatggcttcttctagGGAGCTGGAGGAGCAGTTGAACTGGCACCTGGGTACCTAAAACTGGTCTATGACATTGTACACAAAGCTGGTGGTGTCTGCATTGCTGATGAAGTGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattggaacattatggattccatttcaaaattctcattttggaaaactttagGGAGTGGGAGGAGCAGTGGAATTAGCCCCTGGATACTTGAAACTGGTTTATGACATCGTCCGCAAGGCTGGGGGTGTTTGTATTGCTGACGAAGTGCAAA
                             aaaattctcatttt  TA-rich tract