1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcacatggattgattgtttatatgcagcatgctttttgaatgcatggtaatgtgagtcaaattcgctaatccattgttttatatattctcatgatgcagTATGCATCAGTGGAGGAAGCCATGGAGACACGAAATGCAGTATATAACCTACAATGGCCTTCAAATGGAGGACGCCTCCTGGTGGCTGAATTTGTTGACC
species | Vitis vinifera |
transcript | Vv07s0031g01210.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTCACCAGTTTCTGGATGGACCACATAAAAACACACTGCTATGTCTCT TATGCATCAGTGGAGGAAGCCATGGAGACACGAAATGCAGTATATAACCTA
genomic: GTGTCACCAGTTTCTGGATGGACCACATAAAAACACACTGCTATGTCTCTgtaagtatat ... catgatgcagTATGCATCAGTGGAGGAAGCCATGGAGACACGAAATGCAGTATATAACCTA
tggtaatgtgagtcaaattcgctaatccattgttttatatattctcatgatgcagTATGCATCAGTGGAGGAAGCCATGGAGACACGAAATGCAGTATATAACCTACAATGGCCTTCAAATGGAGGACGCCTCCTGGTGGCTGAATTTGTTGACC
cgctaat putative branch site (score: 3)
tattctc putative PPT
taatccattgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcacatggattgattgtttatatgcagcatgctttttgaatgcatggtaatgtgagtcaaattcgctaatccattgttttatatattctcatgatgcagTATGCATCAGTGGAGGAAGCCATGGAGACACGAAATGCAGTATATAACCTACAATGGCCTTCAAATGGAGGACGCCTCCTGGTGGCTGAATTTGTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-gcacatg
- - - - - - - - - - atatgca
- - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - gaatgca