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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA

Basic information

species Vitis vinifera
transcript Vv07s0031g00920.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 4
gtagtcgtaatcttcaattt--cttaaac--atgaatcttaaaaatggaatgggcttttcttcttttctgattttgtatgtatg----------------attagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
      || || |||  |||  | | |||  |  ||  | |  ||  |  ||    |   ||  |||  | |||  |    |||                || |||||||| ||||||   | ||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||  || | |  ||  |||| |||||||| 
-----tgtgattttctgtttgacatgaactgacaaaattcagcaaaagtttgtatgtacattaattttggttttgatggacatgggtgggatttgttggtataagGGAGTTCAAGGAGAAGAGCAAGGTGGACAAGGTGGTGGTGCTGTGGACGGCCAACACGGAGCGGTACAGCAACGTGGTGGCCGGGATGAACGACACCATG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G02210.2 (Glycine max), 3'ss of exon 4
gtagtcgtaatcttcaatttcttaaacatgaat-cttaaaaatggaatgggcttttcttcttttctgattttgtatgt----atga--ttagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
|||   ||  | ||  | |    | ||||  || | || | |   |   |   | | |  | ||| | || |   |||    ||||  | |||| ||||||||| || ||||| ||||| |||||||| || ||||||||||||||||||||| | || || |||||| |||| || || ||||||||||| 
gtatatgtcctatttcaatctacatacatacatacatacatacatacatgatctgtatcttattcaggttctaactgttgacatgaactcagGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTCCTGTGGACTGCCAACACAGAGAGGTATAGCAATTTGGTTGTAGGCCTTAATGACACCATG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 1
gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttcttttctgattttgtatg----tatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
||||   ||||| | |  |  ||| | |  | |  | |   || ||   |||  |   || |     | |  ||||    ||   ||||||||||||||||    || ||||| || |||||||| || |||||||| |||||||||||| | ||||| ||  |  |||||||||| || |||||||| 
gtaggtctaatcataatctatttatatactattactcagtttgaaactcgctcataccctatatatgtgtgttatgaaattaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACCTAGTTGTGGGACTAAACGACACCATG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 3
gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
                  |   ||  | |  ||   |||| | |   |    ||  |   ||  ||  |||| || | |  |||||||||||||||||   | ||| ||||||||| |||| ||| | |||||||| ||||||||||| || || ||| ||||||| ||||| || || || |  
-----------------gtatatagtcttacatagcaaaattagttagttagttagtgtattgatgtgtttgaatattt--ttagGGAGTTTAAGGAGAAGAACAAAGTGGATAAGTTGGTTGTGTTATGGACTGCAAACACAGAGCGTTATAGCAATGTGATTGTAGGACTTAACGATACGACG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttctttt-ctgattttgt-atgtatgat---------tagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
      || |   ||  ||   ||   || | |||||    | |||| |  | |  |    ||  |||| |  |   || ||||         ||||||||||||||||   |  |||||||||||||| ||||| || ||||| || ||||||||||| || || ||| || | || ||  |||| || || || 
------gttactctctgttc--tagtgattattcttattggttgaatcgaatctcgtctgattattgatgtgatcgagtgtgatgttgaatcttagGGAGTTTAAGGAGAAGAATAAGGTGGATAAGGTTGTGGTTCTCTGGACGGCTAACACAGAGCGTTATAGCAATGTGGTCGTTGGGATGAACGATACAATG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------------------------------------------------------gtagtcgta--atcttcaatttcttaaacatgaatcttaa----aaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
                                                                                           |   ||  || | |||  |     | ||| ||| | |    || |   |   |    | |  |  |   | ||| ||   || ||||||||||| || |||  || ||| |||||||| |||||||| |||||||| || ||||||||  ||||||| ||| || | || || || || ||||| |  
gtaacacaacgtctttactattgtaataaaatattctaaggtaacataacggtttatgtttattagcaaattaaatgtaaattttctctctgctataaaatttccaaaattcattagatgtatcatgatcgtaatttttacaagacaatttgataatgaaaattt-taaaaataattagGGAGTTCAAAGAGAAAAACAAAGTGGATAAAGTGGTGGTACTGTGGACGGCAAACACAGAAAGATACAGCAATGTGGTGGTTGGTCTTAACGACACGACG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 3'ss of exon 4
----------------------gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttctt---ttctgattttgtatg--tatgatt--agGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
                           ||    || ||   | ||      || |     |||| ||  |      |    ||   | ||||  |   |    | |||||  ||||| |||||||     | ||||||||| ||| | || |||||||||||||| ||||| || ||||||||| || |||| || || || |||||||| |  
gtagggcgtccgattctatacttcttccgagccctacagcctgtttctagagagttacggaaattgatcgcatcgatgcgtttgaatgctgaggtcaaaacattgtgattgcagGGACTTTAAGGCTCAGAACAAGGTGGACAAGATCGTTGTGCTGTGGACTGCTAACACCGAACGATACAGTGATGTGATCGTTGGTCTCAATGACACGAAG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------gtagtcgtaatcttca-atttcttaaaca--tgaat-cttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
                               | | |   | ||  |    ||||   |||  ||||| | |     |    |  |  | | |     ||    | | | ||  ||   ||| | || |||| |  ||||||||| || ||||| ||||| |||||||| || ||||||||||| |||||  |  |||| ||||| |||||||||||||  
gtactcatccatcactgagaagcttctcaacgcattaccactcgccgtgcttctgccacaggtgaataccttctggtaatttatgaatatttctgaatccagctatttttggttg--cagGAACTTCAAGGCGCAAACCAAGGTTGACAAGGTAGTGGTACTGTGGACCGCTAACACAGAGCGTTACAGCGACGTGATCGTGGGTCTGAATGACACCAAG

upper sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 4
gtagtcgtaatcttcaatttcttaaacatgaatcttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgatt---agGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
               | ||  |  ||  |  ||      | |          |||||| | |  || ||| |  |  ||   |   ||  | || |||     |||||| ||||| || || |||||  |||||||||| ||||| || || |||||  || |||||||||| ||||||||||| |  
-------------gtacttcgtcgaatctcgatt----gagttcttcctctctttcttttctcatgttttcgctttcatcccttgcagACACTTCAAGTCACAAACCAAAGTGGACAAAGTCGTGGTTTTGTGGACTGCAAACACGGAACGCTACAGCGATGTGATTGTGGGCCTGAATGACACGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726065|gb|EE103102.1|EE103102
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110371149|gb|EC934944.1|EC934944
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110729372|gb|EE105268.1|EE105268
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|18458132|gb|BM436410.1|BM436410
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110713164|gb|EE088844.1|EE088844
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCCGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|30296451|gb|CB973245.1|CB973245
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|30298421|gb|CB975215.1|CB975215
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGGGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|33405434|gb|CF211061.1|CF211061
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|351016826|gb|FQ424253.1|FQ424253
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|294966526|gb|GW837661.1|GW837661
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTATGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110733015|gb|EE108807.1|EE108807
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110712332|gb|EE089829.1|EE089829
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110686165|gb|EE063519.1|EE063519
EST:     GCACCTAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: GCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110370782|gb|EC932929.1|EC932929
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|351028589|gb|FQ446262.1|FQ446262
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110699399|gb|EE076363.1|EE076363
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAN                         GGAGTTTAAGGGAGGCA-CCAAGGTGGATAAGGTGGGTGGTGCTGTGGACT
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGG-AGGCAACCAAGGTGGATAAGGTGG-TGGTGCTGTGGACT
EST: gi|352781953|gb|FQ469251.1|FQ469251
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCCAGGTGGATAAAGTGG
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGG
EST: gi|349823419|gb|FQ423230.1|FQ423230
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|18458598|gb|BM436876.1|BM436876
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|156736210|gb|EV240331.1|EV240331
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|18459446|gb|BM437724.1|BM437724
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110711003|gb|EE087708.1|EE087708
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|351029253|gb|FQ435453.1|FQ435453
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|30254160|gb|CB971175.1|CB971175
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110710113|gb|EE086162.1|EE086162
EST:     ATCAAAGGCACCAAGAAAGAGCAAGTCCAGCAGATCATTAAAGATATTAG                         GGGAGTTTAAAGAAGCAACCAA
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGG-AGTTTAAGGAGGCAACCAA
EST: gi|110697958|gb|EE075424.1|EE075424
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCTTCCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|18459629|gb|BM437907.1|BM437907
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|349830747|gb|FQ417045.1|FQ417045
EST:     AACAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGTCA-CCAAGGTGGATAAGGTGGTGGTGCTGTGGACTG
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGG-CAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTG
EST: gi|29786214|gb|CB343821.2|CB343821
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110728696|gb|EE104489.1|EE104489
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110698948|gb|EE077030.1|EE077030
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110699779|gb|EE077086.1|EE077086
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGAATAAGGTGGGGGTGCTGGGGACTG
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGA-TAAGGTGGTGGTGCTGTGGACTG
EST: gi|110707916|gb|EE084861.1|EE084861
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|30296613|gb|CB973407.1|CB973407
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|110698025|gb|EE075563.1|EE075563
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTANAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|34547806|gb|CF516038.1|CF516038
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
EST: gi|18459650|gb|BM437928.1|BM437928
EST:     ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAG                         GGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC
genomic: ATCAAAGGCACCAAGAAAGAGCAGGTCCAGCAGATCATTAAAGATATTAGgtagtcgtaa ... gtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttaaaaatggaatgggcttttcttcttttctgattttgtatgtatgattagGGAGTTTAAGGAGGCAACCAAGGTGGATAAGGTGGTGGTGCTGTGGACTGCCAACACAGAGCGATACAGTAATTTGATTGTGGGACTGAATGACACCATA
                               ttctgat  putative branch site (score: 3)
                                    attttgtat  TA-rich tract