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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctattttacttaaggacttagatttcttgagccagtgtggttaagtcattgtgtttttaagtagtcaaatcacttatacaaaattgtcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT

Basic information

species Vitis vinifera
transcript Vv07s0031g00820.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00820.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G101438_T02 (Zea mays), 3'ss of exon 4
gtctattttacttaaggacttagatttcttgagccagt-gtggttaagtcattgtgtttttaagtag-tcaaatcacttatacaaaattgtcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
                             | |||||       |  ||  ||      ||| | ||  | | |  ||||| |   |||| ||||  ||||||||| ||||| ||||||||||||||||| || || || |||
----------------------------gtaagccatccaaaatccagagataacaactttgaataaataagaaaacttacaattaattttcatg-gcagGATGGAGATATCATCAATATTGATGTTACTGTCTACCTCAAT

upper sequence: Vv07s0031g00820.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G39200.1 (Glycine max), 3'ss of exon 4
gtctattttacttaaggacttagatttcttgagccagtgtggtt-aagtcattgtgtttttaagtagtcaaatcacttatacaaaattgtcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
                      | | |  |   | |||    || |||| |       | |  | |   ||||   ||  ||| | |  | ||||||||||||| ||||||||||| ||||||||||| ||||||||||||
----------------------gttcttctatacaagttcttttgaagttaaacatcctgtgtgaaaaaaaatttgttg-acacattctttatttgcagGATGGTGATATAATCAACATTGATGTTACTGTTTATCTAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546470|gb|CF514702.1|CF514702
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|77579149|gb|DV218402.1|DV218402
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|110711473|gb|EE087994.1|EE087994
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|34546385|gb|CF514617.1|CF514617
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|26261950|gb|CA813013.1|CA813013
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|110429644|gb|EC996143.1|EC996143
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|33405491|gb|CF211118.1|CF211118
EST:     CAGTGAATGAATGCATTTGCCATGGAATCCCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|110387367|gb|EC952027.1|EC952027
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
EST: gi|33405428|gb|CF211055.1|CF211055
EST:     CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAG                         GATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
genomic: CAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTCCACTTGAGgtctatttta ... tcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtcattgtgtttttaagtagtcaaatcacttatacaaaattgtcatttgcagGATGGCGATATAATCAATATTGATGTTACCGTTTATCTAAAT
                              acttatacaaaatt  TA-rich tract