Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatctaaacacaccatctgttctctaacccaatggaagatcttatatgggttttgcattcgtcattaattttgacgcatgaattttcattttaaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G28130.1 (Glycine max), 3'ss of exon 4
gtatgtatctaaacacaccatctgttctctaacccaatggaagatcttatatgggttttgcattcgtcattaattttgacgcatgaattttcattttaaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
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--------------------------------------------tctcaatcaaacagagccttagttcagatcttcaaagtttatatctttcctct----ttacaactttgttctattattttacttttgaa----ttctttcttgagcagATATGGTTAAAAATAAGGGCTTTCTGCCATCGGGACCTTCTGAGATACCTATTCAGCGAAATCAAATGAAAGAAATTATTAACTCTCTGCTTCCAGCCTG
upper sequence: Vv07s0005g05600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S110_116V6.1 (Physcomitrella patens), 3'ss of exon 6
gtatgtatctaaacacaccatctgttctctaacccaatggaagatcttatatgggttttgcattcgtcattaattttgacgcatgaattttcattttaaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
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-----------------------------------gacagacgagcgcaagt---ctctgtcgttatgtatgtctttg--gaatgcctcagcatttttt-ctttgactgaacaatgttgacatatgacatggtgttgg-----------cagATATGGTGAAAAACAAAGGCTTCTTGCCTTCTGGACCCTCTGAAGTTTCTGTGCAGCGAAAACAGATCAAATCTATTGTTTATTCTCTGCTGGATGCTTG
upper sequence: Vv07s0005g05600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S159_62V6.1 (Physcomitrella patens), 3'ss of exon 5
gtatgtatctaaacacaccatctgttctctaacccaatggaagatcttatatgggttttgcattcgtcattaattttgacgcatgaattttcattttaaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
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---------------------------------------------tatttaagaatagtgattttgttgttttccatgttatgaatatctttatcgagaatat------attatttccgaacgctattgaatcatgtggtggtgttga-cagACATGGTGAAAAATAAAGGCTTCTTGCCCTCTGGACCTTCTGAAATTTCAGTGCAGCGGAAACAAATCAAATCTATTGTGTACTCCCTATTGGATGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
tatcttttctttctct CT-rich tract
tattttttttttttgc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatctaaacacaccatctgttctctaacccaatggaagatcttatatgggttttgcattcgtcattaattttgacgcatgaattttcattttaaacttccaatcaatatcttttctttctctttcgctattttttttttttgctcagATATGGTTAAAAACAAAGGCTTCCTGCCATCTGGACCTTCAGAAATACCTATTCAACGAAATCAAATGAAAGAAATTGTCTACTCTTTGCTTCCAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA