Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA

Basic information

species Vitis vinifera
transcript Vv07s0005g05160.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g18690.1 (Oryza sativa), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcacca-aacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                                         |  |||  | | |  | |   |    |||  | |    || |  ||||  ||  ||| | ||               |||    |||||||||| ||||| | |||||||||||| |||||||||||| | ||||| ||||| ||||| ||||||||||||||||| ||||| || || |||||||| |
----------------------------------------gtgcttttctacaatgtttcaagtt--ctgtcttattggaaacctgcttcgttcttatcaatagt-------------ttttgggtgcagATACACACATCTAAGATGACATTGGCAGATGATGTTAACCTAGAAGAGTTTGTGATGACCAAGGATGAGTTTTCTGGTGCTGACATCAAAGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g49150.1 (Oryza sativa), 3'ss of exon 3
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                     |  | || || || |  || |     | || || | |   ||| |||||| | | ||   |    ||| ||   ||         ||| |  |  ||      |||||||||| ||||| | |||||||||||| |||||||| ||| ||||||| ||||| ||||| |||||||||||||| || |||||||| || |||||||| |
--------------------gtaaatatccattagtatcttttagaacttcagaatgc--atgataactga-taagcagttcc--tttggttctcat--------gaatgttgtgaatcg----tgcagATACACACATCTAAGATGACATTGGCAGATGATGTGAACCTGGAAGAGTTTGTCATGACCAAGGATGAGTTTTCCGGTGCTGATATCAAAGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G095593_T01 (Zea mays), 3'ss of exon 3
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                            | | | |      | | |  ||   | |  |||    |||    |    ||  |   |||  ||  |||||   |       |  |  | ||    |||||||||| ||||| |  |||||||| ||||||||||| ||||||||||| ||||||||||| || || |||||||| || |||||||| |||||||| ||||
----------------------------gtactgt--gacgtctgtaaatgataatatttgcattaacaatgttcttaatacc--ctttgttcttattatagaagg----ttgtaaacttg---tgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G056569_T01 (Zea mays), 3'ss of exon 3
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagca-aatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                                      || ||   ||    |||     || | |  || || | |||   | |  | ||  || ||  |    | |||     || |  |   ||||||| || |||||||  |||||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||| || || |||||||| ||||| || ||||
-----------------------------------gtgctgtaacatctgtagaca----gtaatatttgcattatcaatgttcg--taatacctttttgtccttataatgaaggttgtaaaccgtgcagATTCACACATCAAAAATGACATTAGCTGACGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCGGGCGCTGATATTAAGGCCATCTGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G104373_T01 (Zea mays), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                           |||  | |     ||     | || || | ||   |     | ||| |  || | ||  |||     | |||| ||   ||| |  |||   | |   ||||||||| ||||| |  |||||| ||||||||||||| ||| | ||||| ||| ||||| | || ||||||||||| || ||||| || ||||| || || |
--------------------------gtgct-tctatgtgatgaaagcttctgagtcct---gttcttttaattaaaaagcatgatttg----ttgttaccaa---aattttgttttgatga---gcagATACACACATCGAAAATGACACTGGCTGATGATGTAAACCTAGAAGAGTTTATTATGTCAAAAGATGAGTTTTCAGGTGCTGACATCAAGGCCATTTGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G35510.1 (Glycine max), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattac-tattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
            |    || |  | | | |  |    || || ||||        |   ||  | | || |||   |  |     |||  |||  | | |||||  |  ||| ||   ||| |  |  |||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
-----------gtcggaatga--ctagttctgtgaaaac-atgtttttggtt--ttcactgacatatcttaatattcctattctacttagttatatctcactaaa-aggtcttatacttttgatatttagATACATACTTCAAGGATGACATTAGCTGATGATGTCAACTTAGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G04920.1 (Glycine max), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                          |  ||| ||    | |  ||||  | || |   ||||| | || ||    || || | | |  || | |||   ||  ||  ||||||   ||  ||||  ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
--------------------------acccaacataagatgttgtttctgctgattctatgtgatatcttaacatgcatactttgttcaatca-tatgcttatacat-tctcatactttggaatta-agATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G32800.1 (Glycine max), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
      ||  |    | ||| ||  || ||||  ||      | ||||| | |  |   ||| | | || |||   |  |     ||| |||| ||| |||||  |  ||| ||   | | || |  ||||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
------gtaggc---acattttgtgaaagcaagtttt----cagtttca-ctgcttcactgttatatcttaatatgcttattctacttaatta-tatgactaaa-aggtcttatacttctgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G19280.1 (Glycine max), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                         ||  ||| || |  | |  ||||  | || |   ||||| | || || ||  | || | | |  || | |||   |||     ||||||   ||  ||||  ||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || || || ||||||||||||||||||||||| |
-------------------------aacccaagatacgatgttgtttctgctgattctatgtgatatcttaa-catgatactttgttcaatca-tatgcttaaatgt-tctcatactttggaatta-agATACACACGTCAAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAAGACGAATTCTCCGGAGCTGATATAAAGGCAATATGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G20140.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                  ||   ||| ||   |  ||  ||  ||||| | |   || || ||     |||||   | |    |   ||||   | ||  |||    ||  |||| |||        ||||||| ||||||| |||||| |||||||| ||||| ||||| ||||| ||||| ||||| || || ||||| || |||||||||||||||||||||||||
-----------------gttccacaactg--gtgatccttaagttttctttc---tttttttg-----tgaattttctagaaagatctgatcggtttt--taattgcatgccatt-att--------agATACACACATCAAAGATGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGTTCTCAGGAGCTGATATAAAGGCAATATGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G29040.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                            | |||||     ||| ||  | | ||  |       |||     |   | || ||  |||| | | |     |  |    |    |||||  ||     ||||||| ||||| | ||||||  |  | || ||||| ||| | ||||| ||||| ||||| || || ||||| || ||||||||||||||||| |||||||
----------------------------gtaatat-----ataattcta-ctgagatggcaaatcaatgacttgttcgaaactttcttgttcattgaggtt--gtgggttctgtttataaaa----tagATACACACATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAGGCTATATGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S12_207V6.1 (Physcomitrella patens), 3'ss of exon 3
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                  | | | | | ||| ||   | | ||   || ||  || |   |||||   ||| | |  | | || | ||  || |   |  |         |   |||||     ||||||| ||||| || || |||||  ||||||||||||| ||| |||| ||||| || ||||| |||||||| |||||||| ||||| || || || || ||||
----------------tgtgaggaagaagca-tagctattctaacctcttcaaacata--gtgacttatgactaa--agatctaggtttttttcctctttt--------tttggttattatgtgtgcagATTCATACTTCTAGAATGACTATGGCTGATGATGTAAACCTGGAGGAATTCGTAATGACCAAGGATGAATTTTCTGGTGCTGACATTAAAGCCATTTGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S109_234V6.1 (Physcomitrella patens), 3'ss of exon 3
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                   |     |     || |     |  ||       || || |  ||| ||  |||   |          |||||  || |   |  |    | | | | || |    ||||||| ||||| || || |||||  ||||||||||||| ||| | || || ||||| ||||| || |||||||||||||| ||||| || || || || || |
-----------------tcttcattagctttatgtgtgagaagttggagattgagttttcttgataaacgaaattct--------tttgatcgct-tgttttggtttcttttaatgatct---ctgcagATTCATACTTCTAGAATGACTATGGCTGATGATGTAAACCTAGAGGAGTTTGTGATGACCAAAGATGAGTTTTCTGGTGCTGACATTAAAGCTATCTGTA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S4_277V6.1 (Physcomitrella patens), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattc--actatattttcatccgacttcttgtgacaactgaa-tcaccaa-acctggcttgattactattactaagcaaatctcattt--atttaaat---tgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
      |||   ||  ||| |   |       |  ||  |   || || | |  |   |    | |  |   |  | |   | ||||  |    |   | ||  ||||    | |  ||   || |  ||   ||||||||||||| || || |||||| ||||||||||||| |||||||| ||||| || ||||| |||||||| || ||||| ||||| || || || || ||||
------gtgatatttcgataacctatgatttgtggtcgaagcgtaattgcttgaggtatacattcatgatgaaccttattgacacctttcccagtaggttttgttaagactgttttgttatgatcttgatctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCGTGATGACCAAGGATGAATTCTCTGGTGCTGACATTAAAGCTATCTGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ20767 (Selaginella moellendorffii), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                                                            |||||   ||  |           ||  | ||  | || |||| ||     | ||  ||    |||||||| |||||||| || |||||| |  |||| ||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||| || |||||||| ||||
------------------------------------------------------------gtgacg--tgttttttttctttgtgcgcgtttgtttttcctaacca-----ctttggttc---ttgcagATCCATACATCGAGAATGACACTCTCTGACGATGTGAACTTTGAAGAGTTTGTGATGACGAAGGACGAATTTTCTGGAGCTGACATCAAGGCAATGTGCA

upper sequence: Vv07s0005g05160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ32659 (Selaginella moellendorffii), 3'ss of exon 4
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
                                                            |||||  |    | |       || |  | ||  | || | || ||     | ||  ||    |||||||| |||||||| || |||||| |  |||| ||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| ||||
------------------------------------------------------------gtgacgtcgtgcttattttttgtg-cgcgtttgtttttcccaacca-----ctttggttc---ttgcagATCCATACATCGAGAATGACACTCTCTGACGATGTGAACTTTGAAGAGTTTGTGATGACGAAGGATGAATTCTCTGGAGCTGACATCAAGGCAATGTGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|229418620|gb|GO652857.1|GO652857
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|27580875|gb|CB003570.1|CB003570
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|110703456|gb|EE080320.1|EE080320
EST:     AGATTGAATTCCCTCT-CCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|30321368|gb|CD004630.1|CD004630
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|26264508|gb|CA815571.1|CA815571
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|27580357|gb|CB003052.1|CB003052
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|27580606|gb|CB003301.1|CB003301
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|30131170|gb|CB916509.1|CB916509
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|110392599|gb|EC958132.1|EC958132
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
EST: gi|71881961|gb|DT031016.1|DT031016
EST:     AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAG                         ATACACACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT
genomic: AGATTGAATTCCCTCTTCCTGACATTAAAACAAGAAGACGCATTTTCCAGgtacatgtgt ... taaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA
          gcttgat  putative branch site (score: 5)
                                       tttattt  putative PPT
                               aaatctcatttattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatgtgtgtttaagattatgcaaatgcaatattcactatattttcatccgacttcttgtgacaactgaatcaccaaacctggcttgattactattactaagcaaatctcatttatttaaattgcagATACATACATCAAGGATGACATTGGCTGATGATGTTAACTTGGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAGGCAATATGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT