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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcagAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG

Basic information

species Vitis vinifera
transcript Vv07s0005g04120.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G162409_T01 (Zea mays), 3'ss of exon 4
gtatatatacttttttactttcat-ctagaaatgagtccctatcatgatggactttttaaggtttct-tgtgatcttgctgaattgaatgcagAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG
     | |  | | |  |  |  |  | ||  | | |    ||        | | ||     | |   | | ||||  |  |||    | |||||||| |||||||| |||||||||||||||| ||| ||||
----gtctgatatctagccctattgttggacgttattgaaaatagctgaaaattattctctatctgaattttatctaac--aatgtgtttcagAAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586746|gb|DV222511.1|DV222511
EST:     AAAAAGCCACTTGCAG                         AAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG
genomic: AAAAAGCCACTTGCAGgtatatatac ... ttgaatgcagAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcagAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAG
              actttttaa  TA-rich tract