1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttcatccttgcatatgatttataggctcagtcatctcaaatcgtgaacagctcatgacaattatattgataaaggatatatcatggaactttctgcagAGCTGTAAACATGAGAGTTGGGTCAGTACCGCTAAGTATTTAATGGATGATGTTCCCGTTCTCTTAAGGTCAGATGATGTGAAAGATGTTGATAAAGTTC
species | Vitis vinifera |
transcript | Vv07s0005g03760.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATGCTTATATCTAGGCCACAGAGAGCGCCAGCGCTGCTTTATACCTTG AGCTGTAAACATGAGAGTTGGGTCAGTACCGCTAAGTATTTAATGGATGAT
genomic: TCATGCTTATATCTAGGCCACAAAGAGCGCCAGCGCTGCTTTATACCTTGgtatggtcct ... ctttctgcagAGCTGTAAACATGAGAGTTGGGTCAGTACCGCTAAGTATTTAATGGATGAT
tgaacagctcatgacaattatattgataaaggatatatcatggaactttctgcagAGCTGTAAACATGAGAGTTGGGTCAGTACCGCTAAGTATTTAATGGATGATGTTCCCGTTCTCTTAAGGTCAGATGATGTGAAAGATGTTGATAAAGTTC
tattgat putative branch site (score: 3)
ctttctgc putative PPT
aattatattgataaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcatccttgcatatgatttataggctcagtcatctcaaatcgtgaacagctcatgacaattatattgataaaggatatatcatggaactttctgcagAGCTGTAAACATGAGAGTTGGGTCAGTACCGCTAAGTATTTAATGGATGATGTTCCCGTTCTCTTAAGGTCAGATGATGTGAAAGATGTTGATAAAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -ccttgca
- - - - - - - - - - - - - - - - tcatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggaa