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...tagttgttgctgttaattcctccctttctattgtttttcttttcctagactttgaataagatattattattgctaaattttgaatgatattgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCCCTCTCTTTGTATCACCTGGTGTTTTACAAAAGGAGAAGGATCACATTG
species | Vitis vinifera |
transcript | Vv07s0005g02620.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|161715595|gb|FC068351.1|FC068351
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|110712760|gb|EE088090.1|EE088090
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|29784140|gb|CB344515.2|CB344515
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGTGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|37190730|gb|CF610079.1|CF610079
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: CCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|110713336|gb|EE089170.1|EE089170
genomic: CCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCEST: gi|110712013|gb|EE089150.1|EE089150
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
EST: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAA ACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
genomic: GCTGTTACATTCTGAGGCCATGGACTATGGCAGTCTGGGAGACGATGCAAgtaagtctga ... tgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTC
tagactttgaataagatattattattgctaaattttgaatgatattgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCCCTCTCTTTGTATCACCTGGTGTTTTACAAAAGGAGAAGGATCACATTG
tgctaaa putative branch site (score: 2)
aataagatattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttgttgctgttaattcctccctttctattgtttttcttttcctagactttgaataagatattattattgctaaattttgaatgatattgaaatgcagACTTTCTTTGATGCGGAGATTAAGAAGATGAAAATCAAGAATTGCTACTTCCCTCTCTTTGTATCACCTGGTGTTTTACAAAAGGAGAAGGATCACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - tgttgct
- - - - - - - - -tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgata