Sequence
atgc intronic sequence ATGC exonic sequence...ggtcggaaataatcttatttgatgttcaatactttatgtaagttttggtgtttggccatgtatgagttacacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G40380.1 (Glycine max), 3'ss of exon 4
---------------------------------------------ggtcggaaataatcttatttgatgttca---atactttatgtaagttttg-gtgtttggccatgtatgagtta--cacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
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gtatgcaagaattgacacttgttttttggttgcacattattgttctgcttgaaattttttttgatggaattcatatatatttttcttgcacataaagaattaaactgtagatgttttaattacaccatttttcatccttgtggaagagcagTTCATATATGATCTACCTGATAAACTAGGCATGTGCATCAAGTCCGAGGACTATGCAAATGCAGTCAAGTTCTATACTGGTGCAATGCCAATTTTTAAG
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G01610.1 (Glycine max), 3'ss of exon 4
---------------------------------ggtcggaaataatcttatt-tgatgttca---atactttatgtaagttttggtgttt-------ggccatgtatgagttacacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
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gtattagagcaatcatgcatgtttctttattctggcccatcatcatttcaatattgtgttcccgcattggtgatatgagttgtgagtcttctgtggaagtggtatatgactgacatactttttacctt---tgtcgaagagtagTTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAG
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G01660.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------ggtcggaaataatcttatttg-atgttcaatacttta-tgtaagttttgg----tgtttggccatg---tatgagttacacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
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gtattaattattaaagcaatcatgcatgtttctttattccggctttgcatcactgaaatatttatgtttccatacttgacttagtggtatgacttctgagtcttttgtggaagtggaatatgactgacatactttttacctt-tgttgaaa---gtagTTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAG
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 3'ss of exon 4
ggtcggaaataatcttatttgatgttcaatactttatgtaagttttggtgtttggccat-gtatgagttacacagatttcatc--------ttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
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gtatgtaatgagtcatttttgctagcttatatatctgct--gtgttgtcacctgatcattatagcaataatatgaatttactcaaattaatttttgtgagaaagagcagTTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGGCGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtgtttggccatgtatgagttacacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
atttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtcggaaataatcttatttgatgttcaatactttatgtaagttttggtgtttggccatgtatgagttacacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaga