Sequence
atgc intronic sequence ATGC exonic sequencegtataagataaataaagctaaactatcataaacttgtcagggtcactagtgcaattaaatgataatattttatctttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os09g24220.1 (Oryza sativa), 3'ss of exon 4
gtataagataaataaagctaaactatcataaacttgtcagggtcactagtgcaattaaatgataatattttatctttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG---------------------------------------------------------------------------------
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gtacaac-tatattttgt--aacagttgtggaat-actaaagttaaggctaccttgtttagtaaatattctatgaat-ttgaaatagatgggcaaattctatgaattatttgaaatggatgcacatgttggggcaaaggagcttgatcttcagtatatgaaggtagtaaattctcttctgcttattcagTATACTGCTGTCACTGCACAATCCAGCTTTTGTTTTAATTCTTATGGCATAACG
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G40350.1 (Glycine max), 3'ss of exon 4
gtataagataaataaagctaaactatcataaacttgtcagggtcactagt-gcaattaaatgataatattttatct-----ttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG
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gtttgagttggttaagttttgttggtgccattattccattccttacaagttacaaccaaatga-aatatttttcctccctattgttgatgcagATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGCGAAAGAGCTTGACTTGCAGTATATGAAG
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G37750.1 (Glycine max), 3'ss of exon 2
gtataagataaataaagctaaac--tatcataaacttgtcagggtcactagt-gcaattaaatgataatattttatct-----ttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG
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gtttgagttggctaagttttgttggtgccattagtccatttcc-ttacaagttatgaccaaatga-aatatttttcctccctattgttggtgcagATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGAGAAAGAGCTTGACTTGCAGTATATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgtcagggtcactagtgcaattaaatgataatattttatctttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG
ttttatctttgttc CT-rich tract
aattaaatgataatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataagataaataaagctaaactatcataaacttgtcagggtcactagtgcaattaaatgataatattttatctttgttcaaacagATGGGCAAGTTTTATGAACTTTTTGAAATGGATGCGCATATAGGAGCAAAAGAGCTTGATTTGCAATATATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT