Sequence
atgc intronic sequence ATGC exonic sequencegtaattttccctttcactagtttctactgtttggtgagttttgagttggtttcggagcatgaagatgaatgtaaaaaatccaaatctaaggttgtcttatagaggaatgtggtaaatgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G01770.1 (Glycine max), 3'ss of exon 3
-------------------------gtaattttccctttcactagtttctactgtttggtgagttttgagttggtttcgga-gcatgaagatgaatgtaaaa--------aatccaaatctaa--ggttgtcttatagagga-at-gtggtaaa-tgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
||| | | | | || |||| | || || ||| | || || | | || | | || ||| |||||| | || | | || || ||| | | | |||| | |||| | ||||| | |||||| ||||||||||||||||| || |||||||| ||| | ||||||||||||||||| | | | ||||| || |||||||
gtaattgtctatattgcatactaaagtagtagttcttcacatgtcattctttttaaaggggaatttcattctttttatggttataaataaatactttttgaatctttcttaatgtgtatctaattatctatcctgaaactgacatagtgatgtactcattttcccccagGGTTTAGATGTACTTGTGCACAGAGGTATATATGAGGCTGCTAAAGGGATATATCAACAGATGTTGCCAGAAGTACGTGCTCACCTAAAATCTCGAGGTT
upper sequence: Vv07s0005g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G37660.1 (Glycine max), 3'ss of exon 3
gtaattttccctttcactagtttctactgtttggtgagttttgagttgg-tttcggagcatgaagatgaatgtaaaaaatccaaatct------aaggttgtctt------atagagg-----aatgtggtaaatgtttttgct-------atagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
|||| | || | | | || | | ||| | ||| | | | ||| | | | | | ||| | || | || | | | | | | | || ||| |||| | || ||||||| | ||||| | || || | ||| |||||||||||||| ||||| |||||||||| ||| | ||||||||||||||| | | | | ||||| || ||| ||
gtaactatcaatattgcaagctgggttttttttctcagtatagggacaaattttgttgtgtttacagaaataaacaaccttgaagttttttttaatgttcacccttaatgaatggagatagataatgagatacgtgttttttttcttcttcttagGGGTTAGACGTCCATGTACATAGAGGTATATACGAGGCTGCAAAAGGGACATATCAACAGATGTTGCCAGAAATTCGTGCTCACCTAAAATCTCATGGTT
upper sequence: Vv07s0005g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G40270.1 (Glycine max), 3'ss of exon 3
gtaattttccctttcactagtttctactgtttggtgagttttgagttggtttcggagcatgaagatgaatgtaaaaaatccaaatctaaggttgtcttatagaggaatgtggtaaatgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
|| | || | || | || | | | || | | | ||||| | || || | ||| || ||| | || | ||||| ||||| | ||||| | ||| |||||||||||||| ||||| |||||||||| ||| | ||||||||||||||| | | | ||||| || ||| ||
----------------gtaactattattatt--gcaagctaacaaataactttgattttttt---ttaatgttca----cccttactgaaattgagataatgagatacatgtt-----tttttttcctagGGGTTAGATGTTCATGTACATAGAGGTATATACGAGGCTGCAAAAGGGACATATCAACAGATGTTGCCAGAAATTCGTGGTCACCTAAAATCTCATGGTT
upper sequence: Vv07s0005g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G01720.1 (Glycine max), 3'ss of exon 3
--------------------gtaattttccctttcactagtttctactgtt-tggtgagttttgagttggtttcggagcatgaa--gatgaatgtaaaa-------aatccaaatctaa--ggttgtcttatagaggaa----tgtggtaaatgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
||| | |||| | || | |||| | | | ||| | | ||| | || || || | | || | | |||||| | || | | || || ||| | ||||||| |||| | ||||| | |||||| ||||||||||| ||||| || |||||||| ||| | |||||||||||||| || | | | ||||| || |||||||
gtaattgtctatattgcatactaaagtagtttttctcatgtcattcttgttataggggaatttcattctttttacggttataaataaatacttttgaatctttcttattgtgtatctaattatctatcctgaaattgacatattgatgtacacatttttgcc-cagGGTTTAGATGTACTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATATATCAACAGATGTTGCCAGAGGTACATGCTCACCTAAAATCTCGAGGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatccaaatctaaggttgtcttatagaggaatgtggtaaatgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
tttttgct CT-rich tract
taaatgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattttccctttcactagtttctactgtttggtgagttttgagttggtttcggagcatgaagatgaatgtaaaaaatccaaatctaaggttgtcttatagaggaatgtggtaaatgtttttgctatagGGACTGGATGTGCCTGTGCATAGAGGTATATATGAGGCAGCAAAAGGGATCTATGAGCAGATGTTGCCAGAAGTCCTTTCCCACCTGCAAGCTCGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG