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...caggatttagtattctttgcctacgaactgtatacttgtcatttttggtgatgaatattacttctttttatttggatttattttttatcaactgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAATATGTGCATCCAAATGACCATGTTAACAGATCACAATCTTCTAATGATA
species | Vitis vinifera |
transcript | Vv07s0005g00880.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGGGAAAAAEST: gi|352782338|gb|FQ470241.1|FQ470241
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|110713618|gb|EE089697.1|EE089697
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTACTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|161712595|gb|FC062197.1|FC062197
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|352773939|gb|FQ473071.1|FQ473071
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|33402485|gb|CF208112.1|CF208112
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|352773568|gb|FQ472350.1|FQ472350
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAAEST: gi|71858005|gb|DT007060.1|DT007060
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAA
EST: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAG GTTATTGCAAATAGAGCAGCTG
genomic: TCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcg ... actgtggcagGTTATTGCAAATAGAGCAGCTG
tggtgatgaatattacttctttttatttggatttattttttatcaactgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAATATGTGCATCCAAATGACCATGTTAACAGATCACAATCTTCTAATGATA
atgaatattacttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggatttagtattctttgcctacgaactgtatacttgtcatttttggtgatgaatattacttctttttatttggatttattttttatcaactgtggcagGTTATTGCAAATAGAGCAGCTGAGATTCTTGGCCATCAGCGTGGTGAAAAATATGTGCATCCAAATGACCATGTTAACAGATCACAATCTTCTAATGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - -tgcctac
- - - - - - - - - - - - - - - - - - - - - - - ggtgatg