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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttaggcaaatatcaatcaaattctggcaccagctggaataccttttccctgtcttaatgttatcttgatgcaaattttgcagGTGAAGCTTTCTTCCTGCCAAAGAATTGTGTTGCTTAATTACAATAAAGACACAAAGCTTATTGATTTTCGGCATTATTCCATTAGATTACAACCTGTTG

Basic information

species Vitis vinifera
transcript Vv07s0005g00470.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G03000.1 (Glycine max), 3'ss of exon 4
gtgagtgcttaggcaaatatcaatcaaattctggcaccagctggaataccttttccctgtcttaatgttatcttgatgcaaattttgcagGTGAAGCTTTCTTCCTGCCAAAGAATTGTGTTGCTTAATTACAATAAAGACACAAAGCTTATTGATTTTCGGCATTATTCCATTAGATTACAACCTGTTG
||||||   |||| | | ||  |  | | |     ||  |       |  |  | | | ||||||||| |     |      | || ||||| ||||| ||  | ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
gtgagtttatagggacacatacacaacaatgacttacttgacaatccaagtccttcatctcttaatgtcac----aacttgttatttcagGTTAAGCTCTCCACTTGCCAAAGAATTGTGTTGCTTAATTACAACAAAGACACTAAGCTCATTGATTTTCGGCATTATTCCATAAGATTACAACCTGTAG

upper sequence: Vv07s0005g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G10700.1 (Glycine max), 3'ss of exon 4
gtgagtgcttaggcaaatat-ca-atcaaattctggcaccagctggaataccttttccctgtcttaatgttatcttgatgcaaattttgcagGTGAAGCTTTCTTCCTGCCAAAGAATTGTGTTGCTTAATTACAATAAAGACACAAAGCTTATTGATTTTCGGCATTATTCCATTAGATTACAACCTGTTG
||||||   |||||| | || || |||||   ||  |   |  |  ||  ||||   |   || |||||| |     |      | || ||||| ||||| ||  | ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |
gtgagtttataggcacacatacacatcaatgacttacttgacatccaagtccttcatc---tcctaatgtcac----aacttgttatttcagGTTAAGCTCTCCACATGCCAAAGAATTGTGTTGCTTAATTACAACAAAGACACTAAGCTCATTGATTTTCGCCATTATTCCATAAGACTACAACCTGTAG

upper sequence: Vv07s0005g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G61770.2 (Arabidopsis thaliana), 3'ss of exon 5
gtgagtgcttaggcaaatatcaatcaaat----tctggcaccagctggaataccttttccc--tgtcttaatgttatcttgatg--caaattttgcagGTGAAGCTTTCTTCCTGCCAAAGAATTGTGTTGCTTAATTACAATAAAGACACAAAGCTTATTGATTTTCGGCATTATTCCATTAGATTACAACCTGTTG
|| |||   | | | |  |   |  | ||    |  |  |     || ||    |||   |  |||  |  |||| |  |||||   |||| |  ||||| ||||| ||  ||||||| ||| | ||  |  | || ||||| |||||||| ||||| |||||||| ||||||||||| || ||| | || |||||||
gtaagtttgttgcctagaactgaaaatatatgcttcgttattgattgtaacttgtttcagcaatgtgattttgttcttctgatggtgaaatatatcagGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAGACACCAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882372|gb|DT031427.1|DT031427
EST:     TCACAACTGTTATGTTTCAGAACATTTTTCCAGCCATTGACGTTAACACT                         GTGAAGCTTTCTTCCTGC
genomic: TCACAACTGTTATGTTTCAGAACATTTTTCCAGCCATTGACGTTAACACTgtgagtgctt ... aattttgcagGTGAAGCTTTCTTCCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagctggaataccttttccctgtcttaatgttatcttgatgcaaattttgcagGTGAAGCTTTCTTCCTGCCAAAGAATTGTGTTGCTTAATTACAATAAAGACACAAAGCTTATTGATTTTCGGCATTATTCCATTAGATTACAACCTGTTG
                          ttaatgttat  TA-rich tract