1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATCCAAAATTCAAGAGAAAGGGGGATGACCTTTTTGTGGAGCACACCTTGT
species | Vitis vinifera |
transcript | Vv06s0080g01230.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|33404304|gb|CF209931.1|CF209931
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110700026|gb|EE077598.1|EE077598
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|32268710|gb|CD717869.1|CD717869
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110387592|gb|EC952273.1|EC952273
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|37188806|gb|CF608155.1|CF608155
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|33404390|gb|CF210017.1|CF210017
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110357032|gb|EC920291.1|EC920291
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|34550729|gb|CF518947.1|CF518947
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|33401675|gb|CF207302.1|CF207302
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: TGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110370916|gb|EC934533.1|EC934533
genomic: TGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAEST: gi|26257948|gb|CA809011.1|CA809011
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAA
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|161720319|gb|FC071172.1|FC071172
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110720243|gb|EE095996.1|EE095996
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|33408559|gb|CF214186.1|CF214186
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGGATCNGGAACATEST: gi|110725781|gb|EE102678.1|EE102678
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|32268367|gb|CD717526.1|CD717526
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|26264365|gb|CA815428.1|CA815428
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAGCATEST: gi|110715780|gb|EE094221.1|EE094221
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGGATATAGTTTTTGTCCTCCAGCAAAAGGGACAEST: gi|27580318|gb|CB003013.1|CB003013
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGG-ATATAGTTTTTGTCCTCCAGCAAAAGGAACA
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110703924|gb|EE081284.1|EE081284
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|26263257|gb|CA814320.1|CA814320
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|71864345|gb|DT013400.1|DT013400
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: CAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110732191|gb|EE107262.1|EE107262
genomic: CAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|32265264|gb|CD716853.1|CD716853
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110710348|gb|EE086606.1|EE086606
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|33408129|gb|CF213756.1|CF213756
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110361232|gb|EC924690.1|EC924690
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110357485|gb|EC921063.1|EC921063
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|34549042|gb|CF517274.1|CF517274
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACACEST: gi|71883426|gb|DT032481.1|DT032481
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|28968729|gb|CB347762.1|CB347762
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|28968571|gb|CB347604.1|CB347604
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|29783677|gb|CB350006.2|CB350006
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: ATGCAAAAT-GATCAGAAAGTTACANTTCCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110363905|gb|EC927537.1|EC927537
genomic: ATGCAAAATGGA-CAGAAAGTTACA-TTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATEST: gi|110732820|gb|EE108451.1|EE108451
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
EST: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCG CCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
genomic: GCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttg ... cattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACAT
ctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATCCAAAATTCAAGAGAAAGGGGGATGACCTTTTTGTGGAGCACACCTTGT
tgttgat putative branch site (score: 4)
tcatttt putative PPT
atagatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttgatgaatcttataatactatctatagatagatatttgttgatgattttatctgcttgttttgggtcattttgcagCCTGACACAGTCACTGGGGATATAGTTTTTGTCCTCCAGCAAAAGGAACATCCAAAATTCAAGAGAAAGGGGGATGACCTTTTTGTGGAGCACACCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA