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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaatgtaaggatactatataccgagctggtatgttttctatccattttgattataataaatagttatttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG

Basic information

species Vitis vinifera
transcript Vv06s0080g00560.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965150|gb|GW836981.1|GW836981
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|30320849|gb|CD004111.1|CD004111
EST:     CAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: CAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|22014795|gb|BQ799829.1|BQ799829
EST:     T-GCACTGATC-TGGAATCTACAGAAAGTCCCATATCCCAGACGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71863030|gb|DT012085.1|DT012085
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71859592|gb|DT008647.1|DT008647
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71864994|gb|DT014049.1|DT014049
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|294963940|gb|GW836815.1|GW836815
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|26257496|gb|CA808559.1|CA808559
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71863516|gb|DT012571.1|DT012571
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|110385570|gb|EC950109.1|EC950109
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|352782096|gb|FQ469394.1|FQ469394
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71865063|gb|DT014118.1|DT014118
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|71858886|gb|DT007941.1|DT007941
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
EST: gi|18459688|gb|BM437966.1|BM437966
EST:     TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAG                         GCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
genomic: TGGCACTGATCTTGGAATCTACAGAAAGTCCCATATCCCAGATGGACCAGgtatgtgaat ... tttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagctggtatgttttctatccattttgattataataaatagttatttcttacagGCTACCAGGAAAAGTTTTACTTCAATCCAGGCGACACTGGCTTTAAG
                       ttttgat  putative branch site (score: 4)
                                          ttatttctt  putative PPT
            ttttctatccattttg  TA-rich tract