1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgcggccatcgctatatatagttcatgagatataagaactcttacgtcctgtttttttatcattgcctctgatctctaaatttgtcactacaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAACACTCACCTACGATGCATTCTTGTCTATGATCATTCCATTTCTTGTAG
species | Vitis vinifera |
transcript | Vv06s0080g00450.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAGTGTGGGATGATTGTGAAG GGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAEST: gi|122691258|gb|EC970784.1|EC970784
genomic: TGTTGAGTGTGGGATGATTGTGAAGgtaagccaac ... acaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCA
EST: TGTTGAGTGTGGGATGATTGTGAAG GGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAEST: gi|122691312|gb|EC972650.1|EC972650
genomic: TGTTGAGTGTGGGATGATTGTGAAGgtaagccaac ... acaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCA
EST: TGTTGAGTGTGGGATGATTGTGAAG GGTTTGACAGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAEST: gi|110386117|gb|EC950691.1|EC950691
genomic: TGTTGAGTGTGGGATGATTGTGAAGgtaagccaac ... acaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCA
EST: TGTTGAGTGTGGGATGATTGTGAAG GGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCA
genomic: TGTTGAGTGTGGGATGATTGTGAAGgtaagccaac ... acaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCA
cgtcctgtttttttatcattgcctctgatctctaaatttgtcactacaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAACACTCACCTACGATGCATTCTTGTCTATGATCATTCCATTTCTTGTAG
ctctaaa putative branch site (score: 3)
tgtttttttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcggccatcgctatatatagttcatgagatataagaactcttacgtcctgtttttttatcattgcctctgatctctaaatttgtcactacaattccagGGTTTGACTGAAAAATTCAAGGAGAAGGATCCACGTTACACTGGTTCAGCAACACTCACCTACGATGCATTCTTGTCTATGATCATTCCATTTCTTGTAG
- - - ccatcgc
- - - - - - - - - - - - catgaga
- - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctct