Sequence
atgc intronic sequence ATGC exonic sequence...attgtctttaagttgtttaagtggctctgcattttttccttgtgtgtattttgtggagtaattttgttgtcatataattggctttgaaccattgatgcagACCCCTAGTTCACCTGTTGCTGGTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGTATCATACTTGTCTGTCATGGATCACAGGCTAATACAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G09100.1 (Glycine max), 3'ss of exon 4
--attgtctttaagttgtttaagtggctctgcattttttccttgtgtgtattttgtggagtaatttt-gttgtcatataattggctttgaaccattgatgcagACCCCTAGTTCACCTGTTGCTGGTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGTATCATACTTGTCTGTCATGGATCA---CAGGCTAATACAGAG
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agattgtgttattccctctttataaaca--aaagttgttttttat-tacaatgtgctcaacagtttaagctgttcttcaaacagaattgaattattaatgcagACCCCTGGTTCACCTATTGCTGGTGGGAAATCTGGAGGTAGAGAGTCAAGTAAGCGGATCATACTTATTTGTAATGGATCAACGCAAGGAAATACAGAG
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G19400.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------attgtctt-taagttgtttaagtggctctgcattttttccttgtgtgtattttgtggagtaatttt-gttgtcatataattggctttgaaccattgatgcagACCCCTAGTTCACCTGTTGCTGGTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGTATCATACTTGTCTGTCATGGAT---CACAGGCTAATACAGAG
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gtatatagtacatttaccaggtacaatgccacaaagtggactagctgaggttaaatgtgagaggcagattgtgttattccctctctataaacaaaagttgttttttttttattacaatgtgctccgcagtttaagctgttctacaaacagaattgaactattaatgcagACCCCTGGTTCACCAATTGCTGGTGGGAAATCTGGAGGTAGAGAGCCAAGTAAGCGGATCATACTTATTTGTAATGGATCAACACAAGGAAATACAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352786696|gb|FQ479903.1|FQ479903EST: CACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAG ACCCCTAGTTC
genomic: CACAAGCTGATGGTGGGCCTCCATATATTTGTCTTAATCGTTTAAATCAGgtatatggtt ... attgatgcagACCCCTAGTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtattttgtggagtaattttgttgtcatataattggctttgaaccattgatgcagACCCCTAGTTCACCTGTTGCTGGTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGTATCATACTTGTCTGTCATGGATCACAGGCTAATACAGAG
cattgat putative branch site (score: 4)
taattttgttgtcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgtctttaagttgtttaagtggctctgcattttttccttgtgtgtattttgtggagtaattttgttgtcatataattggctttgaaccattgatgcagACCCCTAGTTCACCTGTTGCTGGTGGAAGTTCTGCAGGCAGAAAAACCAGTAAGCGTATCATACTTGTCTGTCATGGATCACAGGCTAATACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - -gctctgc
- - - - - - - - - - - - - - - - - -ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttt