1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agatatgttcaatatttgaaataaaagtttgaagatttgaaatatgtaaaccctgacagcattaaattgactgtgatggcttgtgcaaccaaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTAGCCATTGACCCAGAGGTGTTTGCAACATCAACCAACCGAGGAACCATT
species | Vitis vinifera |
transcript | Vv06s0061g01030.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACA GCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTEST: gi|351043367|gb|FQ451419.1|FQ451419
genomic: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttt ... aaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
EST: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACA GCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTEST: gi|352789949|gb|FQ479559.1|FQ479559
genomic: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttt ... aaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
EST: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACA GCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTEST: gi|349811312|gb|FQ407538.1|FQ407538
genomic: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttt ... aaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
EST: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCCCA GCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTEST: gi|351057266|gb|FQ450973.1|FQ450973
genomic: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttt ... aaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
EST: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACA GCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
genomic: GGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttt ... aaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTT
gtaaaccctgacagcattaaattgactgtgatggcttgtgcaaccaaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTAGCCATTGACCCAGAGGTGTTTGCAACATCAACCAACCGAGGAACCATT
aattgac putative branch site (score: 3)
attaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatatgttcaatatttgaaataaaagtttgaagatttgaaatatgtaaaccctgacagcattaaattgactgtgatggcttgtgcaaccaaacttgcagGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTAGCCATTGACCCAGAGGTGTTTGCAACATCAACCAACCGAGGAACCATT
- - - - - - - - tgaaata
- - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - ccctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc