Sequence
atgc intronic sequence ATGC exonic sequence...ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G08770.1 (Glycine max), 3'ss of exon 6
----ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgat-atgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
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atgtttgcaatggtgtagatagtagattcttaacttcatttttttt---atatttataaatgtgttgtcatttaaatgattctctgatttgtctttttga--cagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGC
upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G39560.2 (Glycine max), 3'ss of exon 5
---------------------------------------ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
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gtgcgttcatttgcaggacataactgcttttctttagctgatgtactctttagtcttgacattctagtgcttacttttcccat----ctcataatcgtgttattattttaataattttctgattggatttttctggcagGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAAC
upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G19750.1 (Glycine max), 3'ss of exon 6
ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccattttt--------gtggttttagcttgata-tgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
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---atgatttataggaacaaaaaagtttaaa----tttgctgggtataactatttttttataaatgtgttgtcatttaaataattctctgatttgtctttttgg--cagGATTTGGAGATTATTAACGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGC
upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G30330.1 (Glycine max), 3'ss of exon 7
---------------------------------------ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
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gtgcgttcatttgccggacataactgcttttctttagctgatgtactctttagtcttgacattcaagtgcctacttttcccat----ctcacaatcgtgtcattatttttgtaatttctggttggatttttctgt-cagGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAACAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGC
upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G27950.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------------------ccttcaca-ctgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
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gtaagactagtcccaaacttaatccctagggtgaagggtgccaaagcaattgtcttttctaaagatgaaggaactcattggttgatattttatatgctgttgcgcttatttgtta--acttgatcaacaatatctctgcagGATTGGGATTCGATCAACGATTTGAGGGTTGACATGGGTAGAATACAGCAAAGGATGGATAACCTGCAGAGGATGCTAGAGGCTTGCATGGAAATGCAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732740|gb|EE108301.1|EE108301EST: TACACCATGATCATTGGTCACAGCAAAATATGCATCCCCGCTTTGGAATG GAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAG
genomic: TACACCATGATAATTGGTCACAGCAAAATATGCATCCCCGCTTTGGAATGgtaagtccat ... tttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
atatgatttaatttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttcacactgtggctttaaaactttctgacacatttttctaggaatatccatttttgtggttttagcttgatatgatttaatttgattgtttggagcagGAATGGGAGGTCATTAATGACCTGAGGATTGACTTGGCTAGGCTGCAGCAGAGGATGAACAACATGCAGAGAATGCTTGAGGCTTGCATGGATATGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
ccttcac
- - - - - -tggcttt
- - - - - - - - - aaaactt
- - - - - - - - - - - - - ctgacac
- - - - - - - - - - - - - - - - - - - - -aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagcttg