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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctatttttcaccttatactttcttctgcttggggatagtgtggtcatagtatgtcacctgcgaaactcattttatgacatatcacttgtcaattacactagctttaatttatttttaaatgtaatttgacaagttagaggcaatatacttgattgaatttctagttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA

Basic information

species Vitis vinifera
transcript Vv06s0061g00610.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00610.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G19900.1 (Glycine max), 3'ss of exon 4
gtttctatttttcacct-tatactttcttctgcttggggatagtgtggtcatagtatgtcacctgcgaaactcatttta---tgacatatcactt--gtcaattacactagctttaatttatt-tttaaatgtaatttgacaagttagaggcaa-tatacttgattgaatttct-agttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA
       ||  |||  | | |  ||| || || |   || |  |||  |  |   ||||||       | ||  |||||   || || |  |||      |   | | |    | |||||| |  ||| |||  ||  ||  |    || |    | |  || | ||  | | | ||||| | || |||  ||||  ||||| ||   |||||||||||| ||| | || ||||||||||| || ||||| | |||| ||||||| |||||||||||  || | ||  | ||| |||| ||
------gttgctcaagtgtcttgtttgttatgatgttggtttttgttattttgccatgtcaaaaaactatctgtttttagtatggcaaaatactgaaacaagccatatttagatcaatttactgcttatatgctatcagaggaaactgatgtgcctgtttttaagtggttatatcagttaatattatatgttctt--tcagGAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTTTCTGTGTGGTCATGTAGAAAAGCCAGTAGCCGTTTGGGCCTTCAA

upper sequence: Vv06s0061g00610.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G08570.2 (Glycine max), 3'ss of exon 5
-----------gtttctatttttcaccttatactttcttctgcttggggatagtgtggtcatagtatgtcacctgcgaaactcattttatgacatatcacttgtcaattacactagctttaatttatt-tttaaatgtaatttgacaagttagaggcaa-tatacttgattgaat-ttctagttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA
           || | | ||| | |     ||   | || |  || |  ||  |    |   |  |    |||  |     | |  || |   |   |       |   | | | |  | ||| || |  ||| |||  ||  ||  |    || |    | |  || | ||  | |  |||||| | || |||  |    |||||| ||   |||||||||||| ||| | || ||||||||||| || ||||| | || | ||||||| |||||||||||| || | || || ||| |||| ||
gttgctccagtgtctttgtttgttaaggc-tatcgtgttgttttttgttattttacaatgtcaaaaaa--accatcagtttttagcttgtctaaatactgaaacaagccatatttggatcaatgtactgcttatatgctatcagaggaaactgatgtgcctttttttaagtggttatattagttaatattatatgct----ttcagGAGACATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTATCTGTGTGGTCATGTAGAAAAAACAGTAGCCATTTGGGCCTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaggcaatatacttgattgaatttctagttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA
             acttgat  putative branch site (score: 5)
                               ttacttttctattgtc  putative PPT
        aatatactt  TA-rich tract