1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaaactagtgctagtacatctcccttcttaatgcatgcatatcatacaccaaaagaaaaacttgtgatggactattctctttatttcatcctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTGCAACCTAAAAGAAGCTGTCCAGCGGGCTGGGCTACTGTGGGAAGGCCGT
species | Vitis vinifera |
transcript | Vv06s0009g02780.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCGTATTTCAACAG GTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTGEST: gi|87585158|gb|DY473991.1|DY473991
genomic: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCATATTTCAACAGgcaagtttaa ... cctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTG
EST: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCGTATTTCAACAG GTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTGEST: gi|33406350|gb|CF211977.1|CF211977
genomic: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCATATTTCAACAGgcaagtttaa ... cctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTG
EST: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCATATTTCAACAG GTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTG
genomic: GAATCTGAGTGCCGATTCAAGAGGATCCGAAAGCCACCATATTTCAACAGgcaagtttaa ... cctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTG
tacaccaaaagaaaaacttgtgatggactattctctttatttcatcctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTGCAACCTAAAAGAAGCTGTCCAGCGGGCTGGGCTACTGTGGGAAGGCCGT
ctattctctttatttc CT-rich tract
tattctctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaactagtgctagtacatctcccttcttaatgcatgcatatcatacaccaaaagaaaaacttgtgatggactattctctttatttcatcctttttcagGTGGATTAACTTGAAGGTTCCATTCCATGAGGTATTTGGCAACATCAGGTGCAACCTAAAAGAAGCTGTCCAGCGGGCTGGGCTACTGTGGGAAGGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - gtgctag
- - - - - - - - - - - cccttct
- - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - acaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgatgg