1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgttttgaatcttcagagtcacttctatctctatgtttttccagtgattctttgttctgtaaactgctcttctgtctatctagtttagttagatattaaagttttgggattgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
species | Vitis vinifera |
transcript | Vv06s0009g01800.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTAACTTCTCCAG GTCCTGAGAAGGATGACCAAGGGAGGCCAGEST: gi|110707837|gb|EE084694.1|EE084694
genomic: GTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGgtatgttttg ... tgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
EST: GTTGCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTAACTTCTCCAG GTCCTGAGAAGGATGACCAAGGGAGGCCAGEST: gi|28962085|gb|CB341118.1|CB341118
genomic: GTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGgtatgttttg ... tgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
EST: GTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAG GTCCTGAGAAGGATGACCAAGGGAGGCCAGEST: gi|161712182|gb|FC061554.1|FC061554
genomic: GTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGgtatgttttg ... tgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
EST: GTTGCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTAACTTCTCCAG GTCCTGAGAAGGATGACCAAGGGAGGCCAG
genomic: GTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGgtatgttttg ... tgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
gctcttctgtctatctagtttagttagatattaaagttttgggattgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
tttagttagatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttgaatcttcagagtcacttctatctctatgtttttccagtgattctttgttctgtaaactgctcttctgtctatctagtttagttagatattaaagttttgggattgttcaccagGTCCTGAGAAGGATGACCAAGGGAGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG