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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtcgcttatttgtcaaattgtttgactttttagatgatctttatttttctgttccattacattgcttcgatgtggtttgcagACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCT

Basic information

species Vitis vinifera
transcript Vv06s0009g00440.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G31460.2 (Glycine max), 3'ss of exon 6
gtttggtcgcttatttgtcaaattgtttgactttttagatgatctttatttttctgttccattacat-tgcttcgatgtggt-------ttgcagACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCT
|||||     ||  || |    |   ||   || | | |    |||| | || ||||| ||| | |  || | |  | |  |       ||||||||||| ||||| |||||||| ||||||||||| ||  ||||| ||||||| | |||  ||
gtttgtgattttcattatgctttgtgttctgttataaaaaaggctttttattgctgtttcatgatacctgataccgtatcatattgtttttgcagACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTTCCT

upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G38930.1 (Glycine max), 3'ss of exon 5
gtttggtcgcttatttgtcaaattgtttgactttttagatgatctttatttttctgttccattacattgcttcg-atgtggtttgcagACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCT
||||||    ||  || |    |  ||||  || | | |  | |||| | ||  |||| ||| | |     ||  ||    |||||||||||| ||||| |||||||| ||||||||||| ||  ||||| ||||||| | |||| ||
gtttgggattttcattatgctgtgttttg--ttataaaaaaaactttttattgatgtttcatgataccatatcatattgtttttgcagACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagatgatctttatttttctgttccattacattgcttcgatgtggtttgcagACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCT
      atgatctttattttt  TA-rich tract