1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatattgtatttactggcaatggcatgcatgtttcagttcagcttgcattatggttttgtggtgggttgggatagttctcaagttccagccttgcctgttggggagtgctactgtgtgcctgaaataatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATAAAGGATCAGGAGCACAATGGTTCCC
species | Vitis vinifera |
transcript | Vv06s0009g00410.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTEST: gi|32269940|gb|CD719099.1|CD719099
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTEST: gi|110693884|gb|EE070506.1|EE070506
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAAGCCA-TGGGEST: gi|32269627|gb|CD718786.1|CD718786
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAA-GCCAATGGT
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTEST: gi|71871047|gb|DT020102.1|DT020102
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTEST: gi|32268362|gb|CD717521.1|CD717521
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
EST: ATTCCGACAAACACATGCTTGCGAAACAAACGGGGCTTACGCGAAGCCAG GTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
genomic: ATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgta ... tgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTT
taatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATAAAGGATCAGGAGCACAATGGTTCCC
atctaac putative branch site (score: 2)
ctttttgc CT-rich tract
taattggatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattgtatttactggcaatggcatgcatgtttcagttcagcttgcattatggttttgtggtgggttgggatagttctcaagttccagccttgcctgttggggagtgctactgtgtgcctgaaataatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcagGTGTCAAACTGGTTCATAAATGCTCGGGTTCGACTGTGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATAAAGGATCAGGAGCACAATGGTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA