1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttggtgattattattcccttcaagagcatttggcaattcctgcttcctgtccagttatcatttttcaattaatcactccgattaaatactaggacagAAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACT
species | Vitis vinifera |
transcript | Vv06s0004g07390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGATCGAAAAATGCTCCAAAATTATTGGGGTCCATGGAACCTAGTGAAG AAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGGTCTAEST: gi|71864691|gb|DT013746.1|DT013746
genomic: AAGATCGAAAAATGCTCCAAAATTATTGGGGTCCATGGAACCTAGTGAAGgtactcaaat ... actaggacagAAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGGTCTA
EST: AAGATCGAAAAATGCTCCAAAATTATTGGGGTCCATGGAACCTAGTGAAG AAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGG
genomic: AAGATCGAAAAATGCTCCAAAATTATTGGGGTCCATGGAACCTAGTGAAGgtactcaaat ... actaggacagAAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGG
cttcctgtccagttatcatttttcaattaatcactccgattaaatactaggacagAAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACT
aattaat putative branch site (score: 3)
agttatcatttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttggtgattattattcccttcaagagcatttggcaattcctgcttcctgtccagttatcatttttcaattaatcactccgattaaatactaggacagAAGCAAAAGGGGGTGATTGCTAGATCAATTCTTCTAAGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
tgtttgg
- - - - - - - - - cccttca
- - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcactcc