1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...tttctgttctggttgtaattgtggcaaatgctctttatatgtttgctattttgtggtcttatgcttctatatctgattcactttgttaacatttacatagGAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGCATGGTTGAATCAAAGTCAGTAGGGACATTTTCACCGTTGCAAAAGCAAG
species | Vitis vinifera |
transcript | Vv06s0004g06920.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTCCAATAAGGATGCTGGTGTTTCTGTTGATCGGCCTGCAACTATAAAG GAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGCEST: gi|352764398|gb|FQ472755.1|FQ472755
genomic: ATTCCAATAAGGATGCTGGTGTTTCTGTTGATCGGCCTGCAACTATAAAGgtttatcttg ... atttacatagGAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGC
EST: ATTCCAATAAGGATGCTGGTGTTTCTGTTGATCGGCCTGCAACTATAAAG GAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGC
genomic: ATTCCAATAAGGATGCTGGTGTTTCTGTTGATCGGCCTGCAACTATAAAGgtttatcttg ... atttacatagGAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGC
ctattttgtggtcttatgcttctatatctgattcactttgttaacatttacatagGAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGCATGGTTGAATCAAAGTCAGTAGGGACATTTTCACCGTTGCAAAAGCAAG
tgttaac putative branch site (score: 2)
tttgttaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgttctggttgtaattgtggcaaatgctctttatatgtttgctattttgtggtcttatgcttctatatctgattcactttgttaacatttacatagGAGATGGAGGTCATTGTCCCTGATCCATCCAAAGTGTATTCAGGTTCTGGCATGGTTGAATCAAAGTCAGTAGGGACATTTTCACCGTTGCAAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - -tggttgt
- - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - ttgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc