Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttgagatccctagattataccatcccttccagcttctttactaaccatcaaagcttttcagTTTGCAGGTGGTTTTGATGTGGATACAATGCATGCATTTGAAGAACTAAAGAGGGTTGGAACAGGCAGTAACAAACAACAGCATGCAGTTAACACAATTC

Basic information

species Vitis vinifera
transcript Vv06s0004g06910.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110388330|gb|EC953066.1|EC953066
EST:     AAGACAATCTCATGCTTCAAGGTGTTCGATTTGCTTTTCGAGTTCACCAG                         TTTGCAGGTGGTTTTGATGTGGATACAATGCATGCATTTGAAGAACTAAAG
genomic: AAGACAATCTCATGCTTCAAGGTGTTCGATTTGCTTTTCGAGTTCACCAGgtaaatttga ... agcttttcagTTTGCAGGTGGTTTTGATGTGGATACAATGCATGCATTTGAAGAACTAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctagattataccatcccttccagcttctttactaaccatcaaagcttttcagTTTGCAGGTGGTTTTGATGTGGATACAATGCATGCATTTGAAGAACTAAAGAGGGTTGGAACAGGCAGTAACAAACAACAGCATGCAGTTAACACAATTC
                                tactaac  putative branch site (score: 0)
                                               cttttc  putative PPT
     agattata  TA-rich tract