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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcagggaacctctataactccctgaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT

Basic information

species Vitis vinifera
transcript Vv06s0004g06860.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 4
gcagggaacctctataactccc-tgaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT
            || | ||    || ||     | |||||||||   || |   |||  | ||| | ||       |||||  |  ||||  | |  |   || |||  |    |||   | | | | ||   |  ||||||||| | |  |  |||  | | ||||||||  |||||| |||||| ||||||| ||||| || ||| |||  |||||||| || |||||||||||||| |||||| |||||||||||||||||||
-----------gtaaagctaagatgtattgttttgttgctttctactttctttctata-agtttgactgtggctcatgttatgctctatt--atgtgtgttctattgatgggacttt---tctgagtagt---gagtttaatgtttttaccgtttctcttatctagGTGATGGTGAGCCAGTGAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 4
gcagggaacctctataactccctgaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT
                        | | || || |  | || | |   || |   |    || |||   |||   |||  ||||   | |     || |   |||||  |||   |  |  |  | ||  | |  ||||||| | | ||||  | |  | | ||||||||  |||||| || ||| ||||||| ||||| || ||| |||  |||||||| || |||||||||||||| |||||| |||||||||||||||||||
--------------------gtaaagttaagatgtatcgttttgttgctttctggtttctttctataagtttgactgtgggtcatgttatgctctatta-tgtttgttctatcgatgatacttttctgagttgagtttaatgcttttattgtttttcttatctagGTGATGGTGAGCCGGTTAAGGTGTTTGACCGAACAGCTAATTTGGCGAATAATCAGATTATCAACTATCGTTGTGATCCTACTGAAAAGTGGTTGGTTTT

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G39360.1 (Glycine max), 3'ss of exon 4
gcagggaacctctataac--tccctgaatcaacattttgctt--tctttattttacatatggaattttatt-gcttt----atttgttagtcaatatttcaagaataagcttttgtagtatttttatttttaattt--gtttg-gcatttaatgttctcattgcatcttatgtgt--agGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT
   | ||   | ||| |   ||| | | | ||||| |   ||  | |    ||  | ||||||||| |||| ||| |    ||||   | |  |   ||  | | |     ||  || |||          | |||  | ||| | ||||||| |  | |     ||| || | |  ||| |||  ||| ||  ||||||||||||| ||||| || |||||||  ||||| |||||||| || |||||||| ||||||  ||||||||||||||||||
---gtgagtttttatgattttccattactaaacatatgttttaatttcctgttctcttatggaattctatttgctatctaaattttacatttgaacattttatactccaacttcatactatgcactggaacactttaggcttgtgtatttaatatctttaccatttctcatatctttagGCGATGGTGAACCAATGAAGATGTTTGATCGAACAGCTAATCTGGCTAATAACCAAATAATTAATTATCGTTGTGATCCTAATGAAAAGTGGTTGGTTTT

upper sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 3
gcagggaacctctataactccct-----gaatcaacattttgctttctttattttacatatggaattttattgctttatttgttagtcaatatttcaaga----ataagct---tttgtagtatttttatttttaattt--gtttg-gcatttaatgttctcattgcatcttatgtgt-agGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT
   | ||   | ||| | |  |      ||| ||    |||   ||   | || | | ||||||||| ||||  | ||| |   | |  |||||| || |    |||  |    ||  ||||||          | |||  ||||| | ||||||| |  | |     ||| || | | |||  ||  ||||||  ||||||||||||| ||||| || |||||||  ||||| ||||| || |  |||||||| ||||||  ||||||||||||||||||
---gtgagtttttatgattttccattacgaaacagatgttttaattgcctgttct-cttatggaattctatt-ttctatctaa-attttatatttgaacatcttatacaccatcttcatagtatgccctggaacactttaggtttgtgtatttaatatctttaccatttctcatatcttagGCAATGGTGAGCCAATGAAGATGTTTGACCGAACAGCTAATCTGGCTAATAACCAAATTATTAGTTATCGTTGTGATCCTAATGAAAAGTGGTTGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttatttttaatttgtttggcatttaatgttctcattgcatcttatgtgtagGTGATTCTGAGCCTGTGAAGATGTTTGAGCGAACTGCAAATCTGGTAAATAATCAAATAATCAACTATCGTTGCGATCCTTCTGAAAAGTGGTTGGTTTT
     tatttttaatttgttt  TA-rich tract