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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatggcttattcttgtcatccatgataaattcttcgtttctatgtatcctttttagccttctaatactttactctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG

Basic information

species Vitis vinifera
transcript Vv06s0004g06730.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768954|gb|FQ468145.1|FQ468145
EST:     CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCG                         TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
genomic: CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCGgtaaatggct ... tctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
EST: gi|161712917|gb|FC062390.1|FC062390
EST:     CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCG                         TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
genomic: CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCGgtaaatggct ... tctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
EST: gi|294966337|gb|GW837588.1|GW837588
EST:     CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCG                         TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
genomic: CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCGgtaaatggct ... tctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
EST: gi|352773722|gb|FQ472504.1|FQ472504
EST:     CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCG                         TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
genomic: CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCGgtaaatggct ... tctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
EST: gi|351019690|gb|FQ439507.1|FQ439507
EST:     CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCG                         TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA
genomic: CTCACCATCAAAACCATGGTCATGTTGAAAATGATGAATCATGGGTCCCGgtaaatggct ... tctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttcgtttctatgtatcctttttagccttctaatactttactctctctcagTTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG
                               ttctaat  putative branch site (score: 2)
                                     tactttactctctctc  CT-rich tract
                                  taatacttta  TA-rich tract