Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA

Basic information

species Vitis vinifera
transcript Vv06s0004g05810.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G41600.1 (Glycine max), 3'ss of exon 4
gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA
             ||   || | |||   |  | ||   | |    ||||| ||||| | |   | || |||  ||||| |  |||   |  ||||||||| || || |||||||| || ||||| || ||||| || ||||||||||||| ||||||||||||||| || || |||||||| || || || ||||
---------gtacttaagcttttatgacca--ggccagcttatgccgttatgttttattatcccttgtttac--atggt-atccaatggtggacagGATGGAAACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGA

upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G14240.1 (Glycine max), 3'ss of exon 4
gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA-------------------------------------------------------------------------------
                                                                                         |  |||||| |  || || || ||||| || ||||| || ||||| ||||| || ||||||| ||||||||||||||| || |||||||| || ||||| |||||||                                                                               
----------------------------------------------------------------------------------------gtggacaggaagccaaccctagactctcttgttttggactcatgaaaaatagtagggatggcagaagctatagtacaaatttagccttcactcctccagagtacttgaggacaggtaatatagcctttttgttattattgtttacttgagGCTAAAGGACTTTTTTTGTTAATTTCACCCCTTTCTG

upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G06200.1 (Glycine max), 3'ss of exon 4
gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA
                   | |      | || |||| ||  ||   |    ||| | | | ||| ||| ||| ||   | | |||   |  |||||| |  || || || ||||| || ||||| || ||||| || || || ||||||| ||||||||||||||| || |||||||| || ||||| |||||||
------------------gtatttcagcttttaacctgttttgtgcctc---tttcattgtattttgtcaacttatttggtaccaatggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGA

upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 3'ss of exon 4
----gtactttcaccgttttcactgtcatgtttattgaccttttcagtttgttattttttagttttt--ttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA
    ||  |||  || ||      |   || ||  |     |    |||   ||   | |||       ||||| || | ||||| |      ||||  ||||||||  | ||  | |||||||| ||||| || |||||||| ||||||||||| |||||||| || || ||  |||| | ||| || || || ||||| |
ttttgtggtttttcctttgaactagctctgcttggta--tgtggatgttaactaaagtctagaaaacggttagtttatttatggttatctgcaatttatcagGATGGAGACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAA

upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 3'ss of exon 4
----gtactttcaccgttttcactgtcatgtttattgacct--tttcagtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA
    ||   ||  |  |    |  ||  |  ||| |       |||||  |    | ||  |||  |  | ||| || | | | |     |  |||||  |||| ||  | ||  | |||||||| ||||| || |||||||| ||||||||||| |||||||| || || || ||||| | ||| || || || |||||||
tcgtgtgggtttcctttggaaatagttctacttagtacgtggatttcaact--gcagttaatagaatgctcagtatattaacgattctctacgattttgtagGACGGAGACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299737|gb|CB976531.1|CB976531
EST:     GGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAG                         GATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGAT
genomic: GGCGGGCATTGTACCATGACCTGAATGCTTACAGAGTTTTGTTTGATCAGgtactttcac ... cattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgttattttttagtttttttagtctactcatggtgaatcaacattttacagGATGGTAATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGA
      ttattttttagttttt  TA-rich tract