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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattattctaagtgaagataaaatagcaactcagtgaagcgacagcagtggagtgtactaatatcttgaacctctgcctgtgtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATCTATTTGCCAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g05650.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254917762|gb|GR903414.1|GR903414
EST:     TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG                         GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: gi|27581890|gb|CB004585.1|CB004585
EST:     TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG                         GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: gi|161711076|gb|FC061140.1|FC061140
EST:     TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG                         GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: gi|22010822|gb|BQ795856.1|BQ795856
EST:     TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG                         GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
EST: gi|110367570|gb|EC931509.1|EC931509
EST:     TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAG                         GGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT
genomic: TCCAAATGGAAACAATTCACAAGGTGCATCTAGAGGAAACTGGTGGCAAGgtataattat ... gtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcgacagcagtggagtgtactaatatcttgaacctctgcctgtgtttctgcagGGTCGCTTTATTATTAGGACTTGCCCCTTCTAAGGCATCTGAATTCTACATCTATTTGCCAAG
                   tactaat  putative branch site (score: 1)
                                            tgtttct  putative PPT
                   tactaatat  TA-rich tract