1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggtcaagtcaattattgtgcaacatatgccatgcttcaaacttgaagttgaattcgtgcatttctttagaaattatcagaaggttctagctgaggtttattttgaaattgcacttatcatgaattattcattctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACTGAGTGAGGAAGAGATCAATGCTTTACCTGTTCACAAGTATAAGGTCAC
species | Vitis vinifera |
transcript | Vv06s0004g05080.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACEST: gi|110400098|gb|EC966641.1|EC966641
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACEST: gi|34543939|gb|CF512171.1|CF512171
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACEST: gi|110402228|gb|EC959605.1|EC959605
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
EST: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGG ATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
genomic: AGGATTGCGACTCCAGCTTGCACTTCTTGATCGCGAATTTGATGACCTGGgtatggtcaa ... tctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCAC
tagctgaggtttattttgaaattgcacttatcatgaattattcattctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACTGAGTGAGGAAGAGATCAATGCTTTACCTGTTCACAAGTATAAGGTCAC
ttcattct CT-rich tract
tttattttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcaagtcaattattgtgcaacatatgccatgcttcaaacttgaagttgaattcgtgcatttctttagaaattatcagaaggttctagctgaggtttattttgaaattgcacttatcatgaattattcattctgccacagATTATGAAACCTTGAGATCACTAGATTCTGATAATACTTCCTCAACTTCACTGAGTGAGGAAGAGATCAATGCTTTACCTGTTCACAAGTATAAGGTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA